Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23745 and CA265_RS23750 are separated by 197 nucleotides CA265_RS23750 and CA265_RS23755 are separated by 560 nucleotides
CA265_RS23745: CA265_RS23745 - alpha/beta hydrolase, at 5,795,567 to 5,796,340
_RS23745
CA265_RS23750: CA265_RS23750 - translational GTPase TypA, at 5,796,538 to 5,798,343
_RS23750
CA265_RS23755: CA265_RS23755 - lauroyl acyltransferase, at 5,798,904 to 5,799,830
_RS23755
Position (kb) 5796
5797
5798
5799 Strain fitness (log2 ratio) -2
-1
0
1 at 5795.595 kb on + strand at 5795.611 kb on - strand at 5795.660 kb on - strand, within CA265_RS23745 at 5795.666 kb on + strand, within CA265_RS23745 at 5795.667 kb on - strand, within CA265_RS23745 at 5795.677 kb on + strand, within CA265_RS23745 at 5795.678 kb on - strand, within CA265_RS23745 at 5795.678 kb on - strand, within CA265_RS23745 at 5795.743 kb on - strand, within CA265_RS23745 at 5795.743 kb on - strand, within CA265_RS23745 at 5795.774 kb on - strand, within CA265_RS23745 at 5795.918 kb on - strand, within CA265_RS23745 at 5796.014 kb on + strand, within CA265_RS23745 at 5796.015 kb on - strand, within CA265_RS23745 at 5796.029 kb on - strand, within CA265_RS23745 at 5796.057 kb on + strand, within CA265_RS23745 at 5796.127 kb on - strand, within CA265_RS23745 at 5796.153 kb on + strand, within CA265_RS23745 at 5796.154 kb on - strand, within CA265_RS23745 at 5796.182 kb on - strand, within CA265_RS23745 at 5796.182 kb on - strand at 5796.235 kb on + strand, within CA265_RS23745 at 5796.235 kb on + strand, within CA265_RS23745 at 5796.236 kb on - strand, within CA265_RS23745 at 5796.317 kb on - strand at 5796.338 kb on + strand at 5796.355 kb on + strand at 5796.356 kb on - strand at 5796.379 kb on - strand at 5796.444 kb on + strand at 5796.448 kb on + strand at 5796.465 kb on - strand at 5796.484 kb on - strand at 5796.562 kb on - strand at 5796.565 kb on - strand at 5797.035 kb on + strand, within CA265_RS23750 at 5797.110 kb on + strand, within CA265_RS23750 at 5797.172 kb on - strand, within CA265_RS23750 at 5797.172 kb on - strand, within CA265_RS23750 at 5797.296 kb on + strand, within CA265_RS23750 at 5797.334 kb on + strand, within CA265_RS23750 at 5797.347 kb on + strand, within CA265_RS23750 at 5797.362 kb on - strand, within CA265_RS23750 at 5797.392 kb on + strand, within CA265_RS23750 at 5797.474 kb on - strand, within CA265_RS23750 at 5797.739 kb on + strand, within CA265_RS23750 at 5797.885 kb on - strand, within CA265_RS23750 at 5798.094 kb on + strand, within CA265_RS23750 at 5798.124 kb on - strand, within CA265_RS23750 at 5798.208 kb on + strand at 5798.236 kb on + strand at 5798.254 kb on + strand at 5798.285 kb on + strand at 5798.355 kb on + strand at 5798.355 kb on + strand at 5798.357 kb on + strand at 5798.357 kb on + strand at 5798.362 kb on - strand at 5798.365 kb on - strand at 5798.441 kb on - strand at 5798.469 kb on - strand at 5798.480 kb on + strand at 5798.496 kb on - strand at 5798.498 kb on + strand at 5798.498 kb on + strand at 5798.674 kb on - strand at 5798.675 kb on + strand at 5798.675 kb on + strand at 5798.734 kb on - strand at 5798.835 kb on + strand at 5798.910 kb on - strand at 5798.936 kb on - strand at 5798.968 kb on + strand at 5799.010 kb on + strand, within CA265_RS23755 at 5799.222 kb on + strand, within CA265_RS23755 at 5799.330 kb on + strand, within CA265_RS23755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,795,595 + +0.1 5,795,611 - -0.6 5,795,660 - CA265_RS23745 0.12 +0.1 5,795,666 + CA265_RS23745 0.13 -0.8 5,795,667 - CA265_RS23745 0.13 -0.0 5,795,677 + CA265_RS23745 0.14 -1.2 5,795,678 - CA265_RS23745 0.14 +1.0 5,795,678 - CA265_RS23745 0.14 -0.4 5,795,743 - CA265_RS23745 0.23 +0.3 5,795,743 - CA265_RS23745 0.23 +0.1 5,795,774 - CA265_RS23745 0.27 -1.4 5,795,918 - CA265_RS23745 0.45 +0.3 5,796,014 + CA265_RS23745 0.58 -0.7 5,796,015 - CA265_RS23745 0.58 -0.7 5,796,029 - CA265_RS23745 0.60 -0.7 5,796,057 + CA265_RS23745 0.63 +0.4 5,796,127 - CA265_RS23745 0.72 +0.8 5,796,153 + CA265_RS23745 0.76 +0.9 5,796,154 - CA265_RS23745 0.76 +0.6 5,796,182 - CA265_RS23745 0.79 +0.2 5,796,182 - +1.4 5,796,235 + CA265_RS23745 0.86 +1.0 5,796,235 + CA265_RS23745 0.86 +0.2 5,796,236 - CA265_RS23745 0.86 -0.2 5,796,317 - +0.9 5,796,338 + -0.1 5,796,355 + -0.4 5,796,356 - +0.4 5,796,379 - -0.6 5,796,444 + -0.3 5,796,448 + -0.9 5,796,465 - -0.2 5,796,484 - +0.5 5,796,562 - -0.2 5,796,565 - +1.2 5,797,035 + CA265_RS23750 0.28 -0.6 5,797,110 + CA265_RS23750 0.32 +1.2 5,797,172 - CA265_RS23750 0.35 -0.6 5,797,172 - CA265_RS23750 0.35 -2.4 5,797,296 + CA265_RS23750 0.42 -0.4 5,797,334 + CA265_RS23750 0.44 -1.6 5,797,347 + CA265_RS23750 0.45 -0.5 5,797,362 - CA265_RS23750 0.46 -0.5 5,797,392 + CA265_RS23750 0.47 -0.5 5,797,474 - CA265_RS23750 0.52 -0.5 5,797,739 + CA265_RS23750 0.67 -0.4 5,797,885 - CA265_RS23750 0.75 -0.0 5,798,094 + CA265_RS23750 0.86 +1.0 5,798,124 - CA265_RS23750 0.88 -0.8 5,798,208 + +0.7 5,798,236 + +1.0 5,798,254 + +1.0 5,798,285 + -1.5 5,798,355 + -0.5 5,798,355 + -0.4 5,798,357 + -0.2 5,798,357 + +0.7 5,798,362 - +0.5 5,798,365 - +0.1 5,798,441 - -0.4 5,798,469 - +0.8 5,798,480 + +0.4 5,798,496 - -0.0 5,798,498 + -0.3 5,798,498 + -0.0 5,798,674 - -0.7 5,798,675 + +0.7 5,798,675 + +0.0 5,798,734 - -1.1 5,798,835 + +0.3 5,798,910 - -1.5 5,798,936 - -0.6 5,798,968 + +0.6 5,799,010 + CA265_RS23755 0.11 -0.2 5,799,222 + CA265_RS23755 0.34 +0.9 5,799,330 + CA265_RS23755 0.46 +0.7
Or see this region's nucleotide sequence