Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23670 and CA265_RS23675 are separated by 12 nucleotides CA265_RS23675 and CA265_RS23680 are separated by 225 nucleotides CA265_RS23680 and CA265_RS23685 are separated by 14 nucleotides CA265_RS23685 and CA265_RS23690 are separated by 11 nucleotides
CA265_RS23670: CA265_RS23670 - cyclic nucleotide-binding protein, at 5,782,692 to 5,783,279
_RS23670
CA265_RS23675: CA265_RS23675 - hypothetical protein, at 5,783,292 to 5,783,450
_RS23675
CA265_RS23680: CA265_RS23680 - hypothetical protein, at 5,783,676 to 5,784,863
_RS23680
CA265_RS23685: CA265_RS23685 - hypothetical protein, at 5,784,878 to 5,785,564
_RS23685
CA265_RS23690: CA265_RS23690 - GMP synthase, at 5,785,576 to 5,786,403
_RS23690
Position (kb) 5783
5784
5785 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5782.694 kb on - strand at 5782.695 kb on - strand at 5782.709 kb on + strand at 5782.710 kb on - strand at 5782.729 kb on - strand at 5782.762 kb on + strand, within CA265_RS23670 at 5782.763 kb on - strand, within CA265_RS23670 at 5782.796 kb on + strand, within CA265_RS23670 at 5782.855 kb on - strand, within CA265_RS23670 at 5782.862 kb on + strand, within CA265_RS23670 at 5782.878 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.952 kb on + strand, within CA265_RS23670 at 5782.969 kb on - strand, within CA265_RS23670 at 5782.969 kb on - strand, within CA265_RS23670 at 5783.000 kb on + strand, within CA265_RS23670 at 5783.211 kb on + strand, within CA265_RS23670 at 5783.212 kb on - strand, within CA265_RS23670 at 5783.212 kb on - strand, within CA265_RS23670 at 5783.235 kb on + strand at 5783.235 kb on + strand at 5783.253 kb on + strand at 5783.280 kb on - strand at 5783.309 kb on + strand, within CA265_RS23675 at 5783.310 kb on - strand, within CA265_RS23675 at 5783.460 kb on - strand at 5783.502 kb on - strand at 5783.562 kb on + strand at 5783.563 kb on - strand at 5783.577 kb on - strand at 5783.585 kb on + strand at 5783.585 kb on + strand at 5783.586 kb on - strand at 5783.586 kb on - strand at 5783.589 kb on + strand at 5783.589 kb on + strand at 5783.629 kb on + strand at 5783.629 kb on + strand at 5783.630 kb on - strand at 5783.630 kb on - strand at 5783.700 kb on - strand at 5783.728 kb on + strand at 5783.805 kb on + strand, within CA265_RS23680 at 5783.806 kb on - strand, within CA265_RS23680 at 5783.809 kb on + strand, within CA265_RS23680 at 5783.809 kb on + strand, within CA265_RS23680 at 5783.809 kb on + strand, within CA265_RS23680 at 5783.809 kb on + strand, within CA265_RS23680 at 5783.810 kb on - strand, within CA265_RS23680 at 5783.810 kb on - strand, within CA265_RS23680 at 5783.821 kb on - strand, within CA265_RS23680 at 5783.832 kb on + strand, within CA265_RS23680 at 5783.833 kb on - strand, within CA265_RS23680 at 5783.854 kb on - strand, within CA265_RS23680 at 5783.907 kb on + strand, within CA265_RS23680 at 5783.907 kb on + strand, within CA265_RS23680 at 5783.910 kb on - strand, within CA265_RS23680 at 5783.915 kb on + strand, within CA265_RS23680 at 5783.967 kb on + strand, within CA265_RS23680 at 5783.983 kb on + strand, within CA265_RS23680 at 5784.008 kb on + strand, within CA265_RS23680 at 5784.008 kb on + strand, within CA265_RS23680 at 5784.071 kb on - strand, within CA265_RS23680 at 5784.074 kb on + strand, within CA265_RS23680 at 5784.074 kb on + strand, within CA265_RS23680 at 5784.074 kb on + strand, within CA265_RS23680 at 5784.075 kb on - strand, within CA265_RS23680 at 5784.075 kb on - strand, within CA265_RS23680 at 5784.075 kb on - strand, within CA265_RS23680 at 5784.096 kb on - strand, within CA265_RS23680 at 5784.261 kb on - strand, within CA265_RS23680 at 5784.345 kb on + strand, within CA265_RS23680 at 5784.345 kb on + strand, within CA265_RS23680 at 5784.345 kb on + strand, within CA265_RS23680 at 5784.345 kb on + strand, within CA265_RS23680 at 5784.346 kb on - strand, within CA265_RS23680 at 5784.346 kb on - strand, within CA265_RS23680 at 5784.349 kb on + strand, within CA265_RS23680 at 5784.381 kb on - strand, within CA265_RS23680 at 5784.381 kb on - strand, within CA265_RS23680 at 5784.386 kb on + strand, within CA265_RS23680 at 5784.387 kb on - strand, within CA265_RS23680 at 5784.389 kb on + strand, within CA265_RS23680 at 5784.412 kb on + strand, within CA265_RS23680 at 5784.510 kb on + strand, within CA265_RS23680 at 5784.537 kb on + strand, within CA265_RS23680 at 5784.570 kb on - strand, within CA265_RS23680 at 5784.570 kb on - strand, within CA265_RS23680 at 5784.731 kb on + strand, within CA265_RS23680 at 5784.838 kb on + strand at 5784.858 kb on + strand at 5784.859 kb on - strand at 5784.865 kb on + strand at 5784.865 kb on + strand at 5784.866 kb on - strand at 5785.010 kb on - strand, within CA265_RS23685 at 5785.011 kb on + strand, within CA265_RS23685 at 5785.012 kb on - strand, within CA265_RS23685 at 5785.054 kb on + strand, within CA265_RS23685 at 5785.054 kb on + strand, within CA265_RS23685 at 5785.057 kb on - strand, within CA265_RS23685 at 5785.057 kb on - strand, within CA265_RS23685 at 5785.057 kb on - strand, within CA265_RS23685 at 5785.093 kb on + strand, within CA265_RS23685 at 5785.177 kb on + strand, within CA265_RS23685 at 5785.177 kb on + strand, within CA265_RS23685 at 5785.181 kb on + strand, within CA265_RS23685 at 5785.250 kb on + strand, within CA265_RS23685 at 5785.309 kb on + strand, within CA265_RS23685 at 5785.360 kb on - strand, within CA265_RS23685 at 5785.360 kb on - strand, within CA265_RS23685 at 5785.409 kb on - strand, within CA265_RS23685 at 5785.429 kb on + strand, within CA265_RS23685 at 5785.493 kb on + strand, within CA265_RS23685 at 5785.493 kb on + strand, within CA265_RS23685 at 5785.498 kb on - strand at 5785.502 kb on + strand at 5785.502 kb on + strand at 5785.534 kb on - strand at 5785.544 kb on - strand at 5785.622 kb on - strand at 5785.626 kb on + strand at 5785.713 kb on + strand, within CA265_RS23690 at 5785.757 kb on - strand, within CA265_RS23690 at 5785.785 kb on + strand, within CA265_RS23690 at 5785.822 kb on - strand, within CA265_RS23690 at 5785.822 kb on - strand, within CA265_RS23690 at 5785.846 kb on - strand, within CA265_RS23690 at 5785.846 kb on - strand, within CA265_RS23690 at 5785.846 kb on - strand, within CA265_RS23690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,782,694 - +0.3 5,782,695 - +0.9 5,782,709 + -0.5 5,782,710 - -0.3 5,782,729 - +0.8 5,782,762 + CA265_RS23670 0.12 +0.6 5,782,763 - CA265_RS23670 0.12 +0.2 5,782,796 + CA265_RS23670 0.18 -0.6 5,782,855 - CA265_RS23670 0.28 -0.4 5,782,862 + CA265_RS23670 0.29 -0.4 5,782,878 - CA265_RS23670 0.32 +0.0 5,782,921 - CA265_RS23670 0.39 +0.4 5,782,921 - CA265_RS23670 0.39 +1.0 5,782,921 - CA265_RS23670 0.39 +0.2 5,782,952 + CA265_RS23670 0.44 +1.0 5,782,969 - CA265_RS23670 0.47 +0.9 5,782,969 - CA265_RS23670 0.47 +0.7 5,783,000 + CA265_RS23670 0.52 -0.2 5,783,211 + CA265_RS23670 0.88 +1.1 5,783,212 - CA265_RS23670 0.88 +0.5 5,783,212 - CA265_RS23670 0.88 +0.1 5,783,235 + +1.0 5,783,235 + +1.6 5,783,253 + -1.2 5,783,280 - +0.4 5,783,309 + CA265_RS23675 0.11 +0.1 5,783,310 - CA265_RS23675 0.11 +0.9 5,783,460 - +1.4 5,783,502 - +0.3 5,783,562 + +0.0 5,783,563 - +0.4 5,783,577 - -0.7 5,783,585 + +0.3 5,783,585 + -0.7 5,783,586 - +0.0 5,783,586 - +0.8 5,783,589 + +1.4 5,783,589 + +0.5 5,783,629 + +0.2 5,783,629 + +0.2 5,783,630 - +0.0 5,783,630 - -0.0 5,783,700 - -0.4 5,783,728 + +0.7 5,783,805 + CA265_RS23680 0.11 +0.7 5,783,806 - CA265_RS23680 0.11 +0.4 5,783,809 + CA265_RS23680 0.11 -0.1 5,783,809 + CA265_RS23680 0.11 +0.0 5,783,809 + CA265_RS23680 0.11 +0.8 5,783,809 + CA265_RS23680 0.11 +2.0 5,783,810 - CA265_RS23680 0.11 +0.0 5,783,810 - CA265_RS23680 0.11 +2.0 5,783,821 - CA265_RS23680 0.12 +2.0 5,783,832 + CA265_RS23680 0.13 -0.4 5,783,833 - CA265_RS23680 0.13 -0.3 5,783,854 - CA265_RS23680 0.15 +3.8 5,783,907 + CA265_RS23680 0.19 -0.3 5,783,907 + CA265_RS23680 0.19 +0.0 5,783,910 - CA265_RS23680 0.20 +1.0 5,783,915 + CA265_RS23680 0.20 +0.1 5,783,967 + CA265_RS23680 0.24 +0.9 5,783,983 + CA265_RS23680 0.26 +0.1 5,784,008 + CA265_RS23680 0.28 +0.1 5,784,008 + CA265_RS23680 0.28 -0.0 5,784,071 - CA265_RS23680 0.33 +0.1 5,784,074 + CA265_RS23680 0.34 -0.3 5,784,074 + CA265_RS23680 0.34 -1.2 5,784,074 + CA265_RS23680 0.34 +0.5 5,784,075 - CA265_RS23680 0.34 +0.1 5,784,075 - CA265_RS23680 0.34 +0.2 5,784,075 - CA265_RS23680 0.34 -0.5 5,784,096 - CA265_RS23680 0.35 +1.1 5,784,261 - CA265_RS23680 0.49 +0.1 5,784,345 + CA265_RS23680 0.56 +0.6 5,784,345 + CA265_RS23680 0.56 +0.3 5,784,345 + CA265_RS23680 0.56 -0.4 5,784,345 + CA265_RS23680 0.56 +0.1 5,784,346 - CA265_RS23680 0.56 +0.3 5,784,346 - CA265_RS23680 0.56 +0.8 5,784,349 + CA265_RS23680 0.57 +0.6 5,784,381 - CA265_RS23680 0.59 -0.9 5,784,381 - CA265_RS23680 0.59 +0.2 5,784,386 + CA265_RS23680 0.60 +0.7 5,784,387 - CA265_RS23680 0.60 -0.4 5,784,389 + CA265_RS23680 0.60 +2.2 5,784,412 + CA265_RS23680 0.62 +0.4 5,784,510 + CA265_RS23680 0.70 +0.6 5,784,537 + CA265_RS23680 0.72 +0.2 5,784,570 - CA265_RS23680 0.75 +0.2 5,784,570 - CA265_RS23680 0.75 +1.0 5,784,731 + CA265_RS23680 0.89 +0.1 5,784,838 + -0.6 5,784,858 + -0.5 5,784,859 - +0.9 5,784,865 + -0.1 5,784,865 + -0.4 5,784,866 - +0.0 5,785,010 - CA265_RS23685 0.19 +0.3 5,785,011 + CA265_RS23685 0.19 +1.2 5,785,012 - CA265_RS23685 0.20 -0.2 5,785,054 + CA265_RS23685 0.26 +0.4 5,785,054 + CA265_RS23685 0.26 +0.3 5,785,057 - CA265_RS23685 0.26 +0.4 5,785,057 - CA265_RS23685 0.26 +0.1 5,785,057 - CA265_RS23685 0.26 -0.9 5,785,093 + CA265_RS23685 0.31 -0.4 5,785,177 + CA265_RS23685 0.44 -0.4 5,785,177 + CA265_RS23685 0.44 +0.6 5,785,181 + CA265_RS23685 0.44 +0.3 5,785,250 + CA265_RS23685 0.54 -0.0 5,785,309 + CA265_RS23685 0.63 +0.7 5,785,360 - CA265_RS23685 0.70 +0.1 5,785,360 - CA265_RS23685 0.70 -0.7 5,785,409 - CA265_RS23685 0.77 +0.4 5,785,429 + CA265_RS23685 0.80 +0.3 5,785,493 + CA265_RS23685 0.90 -0.3 5,785,493 + CA265_RS23685 0.90 +0.1 5,785,498 - -0.3 5,785,502 + +0.2 5,785,502 + -0.2 5,785,534 - -0.9 5,785,544 - -0.0 5,785,622 - +0.6 5,785,626 + +0.6 5,785,713 + CA265_RS23690 0.17 -0.7 5,785,757 - CA265_RS23690 0.22 +0.6 5,785,785 + CA265_RS23690 0.25 -0.6 5,785,822 - CA265_RS23690 0.30 -0.3 5,785,822 - CA265_RS23690 0.30 -0.1 5,785,846 - CA265_RS23690 0.33 -0.4 5,785,846 - CA265_RS23690 0.33 +0.7 5,785,846 - CA265_RS23690 0.33 -1.3
Or see this region's nucleotide sequence