Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23390

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23385 and CA265_RS23390 are separated by 16 nucleotidesCA265_RS23390 and CA265_RS23395 are separated by 155 nucleotides CA265_RS23385: CA265_RS23385 - GTPase Era, at 5,721,305 to 5,722,201 _RS23385 CA265_RS23390: CA265_RS23390 - alkyl hydroperoxide reductase, at 5,722,218 to 5,722,724 _RS23390 CA265_RS23395: CA265_RS23395 - ribosome biogenesis GTPase Der, at 5,722,880 to 5,724,181 _RS23395 Position (kb) 5722 5723Strain fitness (log2 ratio) -1 0 1 2 3at 5722.256 kb on + strandat 5722.432 kb on - strand, within CA265_RS23390at 5722.432 kb on - strand, within CA265_RS23390at 5722.433 kb on + strand, within CA265_RS23390at 5722.433 kb on + strand, within CA265_RS23390at 5722.433 kb on + strand, within CA265_RS23390at 5722.433 kb on + strand, within CA265_RS23390at 5722.434 kb on - strand, within CA265_RS23390at 5722.473 kb on - strand, within CA265_RS23390at 5722.481 kb on - strand, within CA265_RS23390at 5722.485 kb on - strand, within CA265_RS23390at 5722.557 kb on - strand, within CA265_RS23390at 5722.639 kb on + strand, within CA265_RS23390at 5722.661 kb on - strand, within CA265_RS23390at 5722.790 kb on + strandat 5722.860 kb on + strandat 5722.860 kb on + strandat 5722.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,722,256 + +0.2
5,722,432 - CA265_RS23390 0.42 +0.3
5,722,432 - CA265_RS23390 0.42 +1.0
5,722,433 + CA265_RS23390 0.42 -1.4
5,722,433 + CA265_RS23390 0.42 +0.9
5,722,433 + CA265_RS23390 0.42 +0.3
5,722,433 + CA265_RS23390 0.42 +3.0
5,722,434 - CA265_RS23390 0.43 +1.1
5,722,473 - CA265_RS23390 0.50 +0.3
5,722,481 - CA265_RS23390 0.52 +0.1
5,722,485 - CA265_RS23390 0.53 +0.9
5,722,557 - CA265_RS23390 0.67 -0.3
5,722,639 + CA265_RS23390 0.83 -0.8
5,722,661 - CA265_RS23390 0.87 -0.7
5,722,790 + -0.2
5,722,860 + +0.2
5,722,860 + -0.2
5,722,860 + -0.7

Or see this region's nucleotide sequence