Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23260

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23255 and CA265_RS23260 are separated by 68 nucleotidesCA265_RS23260 and CA265_RS23265 are separated by 172 nucleotidesCA265_RS23265 and CA265_RS23270 are separated by 84 nucleotides CA265_RS23255: CA265_RS23255 - short-chain dehydrogenase/reductase, at 5,684,847 to 5,685,725 _RS23255 CA265_RS23260: CA265_RS23260 - AraC family transcriptional regulator, at 5,685,794 to 5,686,597 _RS23260 CA265_RS23265: CA265_RS23265 - iron-binding protein, at 5,686,770 to 5,686,994 _RS23265 CA265_RS23270: CA265_RS23270 - hypothetical protein, at 5,687,079 to 5,687,762 _RS23270 Position (kb) 5685 5686 5687Strain fitness (log2 ratio) -1 0 1 2at 5684.820 kb on - strandat 5684.833 kb on - strandat 5684.838 kb on - strandat 5684.911 kb on + strandat 5684.912 kb on - strandat 5684.952 kb on - strand, within CA265_RS23255at 5685.010 kb on + strand, within CA265_RS23255at 5685.034 kb on + strand, within CA265_RS23255at 5685.076 kb on + strand, within CA265_RS23255at 5685.093 kb on - strand, within CA265_RS23255at 5685.146 kb on - strand, within CA265_RS23255at 5685.146 kb on - strand, within CA265_RS23255at 5685.209 kb on + strand, within CA265_RS23255at 5685.210 kb on - strand, within CA265_RS23255at 5685.281 kb on - strand, within CA265_RS23255at 5685.284 kb on + strand, within CA265_RS23255at 5685.285 kb on - strand, within CA265_RS23255at 5685.320 kb on + strand, within CA265_RS23255at 5685.360 kb on + strand, within CA265_RS23255at 5685.420 kb on + strand, within CA265_RS23255at 5685.600 kb on - strand, within CA265_RS23255at 5685.650 kb on - strandat 5685.650 kb on - strandat 5685.705 kb on - strandat 5685.837 kb on - strandat 5685.998 kb on + strand, within CA265_RS23260at 5686.076 kb on + strand, within CA265_RS23260at 5686.076 kb on + strand, within CA265_RS23260at 5686.077 kb on - strand, within CA265_RS23260at 5686.261 kb on - strand, within CA265_RS23260at 5686.316 kb on + strand, within CA265_RS23260at 5686.317 kb on - strand, within CA265_RS23260at 5686.317 kb on - strand, within CA265_RS23260at 5686.318 kb on + strand, within CA265_RS23260at 5686.318 kb on + strand, within CA265_RS23260at 5686.318 kb on + strand, within CA265_RS23260at 5686.319 kb on - strand, within CA265_RS23260at 5686.319 kb on - strand, within CA265_RS23260at 5686.319 kb on - strand, within CA265_RS23260at 5686.319 kb on - strand, within CA265_RS23260at 5686.333 kb on + strand, within CA265_RS23260at 5686.344 kb on + strand, within CA265_RS23260at 5686.467 kb on - strand, within CA265_RS23260at 5686.526 kb on - strandat 5686.596 kb on - strandat 5686.598 kb on + strandat 5686.633 kb on - strandat 5686.660 kb on - strandat 5686.683 kb on + strandat 5686.695 kb on + strandat 5686.696 kb on - strandat 5686.730 kb on - strandat 5686.732 kb on - strandat 5686.740 kb on + strandat 5686.740 kb on + strandat 5686.742 kb on + strandat 5686.801 kb on - strandat 5686.884 kb on + strand, within CA265_RS23265at 5686.899 kb on + strand, within CA265_RS23265at 5686.906 kb on + strand, within CA265_RS23265at 5686.996 kb on + strandat 5686.996 kb on + strandat 5686.997 kb on - strandat 5687.019 kb on + strandat 5687.075 kb on + strandat 5687.080 kb on + strandat 5687.081 kb on - strandat 5687.081 kb on - strandat 5687.102 kb on - strandat 5687.139 kb on - strandat 5687.246 kb on - strand, within CA265_RS23270at 5687.256 kb on + strand, within CA265_RS23270at 5687.286 kb on + strand, within CA265_RS23270at 5687.287 kb on - strand, within CA265_RS23270at 5687.362 kb on + strand, within CA265_RS23270at 5687.363 kb on - strand, within CA265_RS23270at 5687.436 kb on - strand, within CA265_RS23270at 5687.479 kb on - strand, within CA265_RS23270at 5687.532 kb on + strand, within CA265_RS23270at 5687.532 kb on + strand, within CA265_RS23270at 5687.533 kb on - strand, within CA265_RS23270

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,684,820 - -0.6
5,684,833 - +0.1
5,684,838 - -0.6
5,684,911 + -1.2
5,684,912 - +1.3
5,684,952 - CA265_RS23255 0.12 -0.4
5,685,010 + CA265_RS23255 0.19 -0.0
5,685,034 + CA265_RS23255 0.21 -0.6
5,685,076 + CA265_RS23255 0.26 -0.1
5,685,093 - CA265_RS23255 0.28 +0.4
5,685,146 - CA265_RS23255 0.34 -0.2
5,685,146 - CA265_RS23255 0.34 -0.2
5,685,209 + CA265_RS23255 0.41 -1.4
5,685,210 - CA265_RS23255 0.41 +0.4
5,685,281 - CA265_RS23255 0.49 +1.1
5,685,284 + CA265_RS23255 0.50 -0.1
5,685,285 - CA265_RS23255 0.50 -0.5
5,685,320 + CA265_RS23255 0.54 -0.5
5,685,360 + CA265_RS23255 0.58 +0.1
5,685,420 + CA265_RS23255 0.65 +0.3
5,685,600 - CA265_RS23255 0.86 -0.3
5,685,650 - -0.1
5,685,650 - -0.6
5,685,705 - +0.7
5,685,837 - +2.4
5,685,998 + CA265_RS23260 0.25 +2.0
5,686,076 + CA265_RS23260 0.35 -0.3
5,686,076 + CA265_RS23260 0.35 -0.2
5,686,077 - CA265_RS23260 0.35 +0.4
5,686,261 - CA265_RS23260 0.58 +0.1
5,686,316 + CA265_RS23260 0.65 -0.4
5,686,317 - CA265_RS23260 0.65 +0.4
5,686,317 - CA265_RS23260 0.65 +0.6
5,686,318 + CA265_RS23260 0.65 -0.3
5,686,318 + CA265_RS23260 0.65 -1.2
5,686,318 + CA265_RS23260 0.65 +0.1
5,686,319 - CA265_RS23260 0.65 +1.0
5,686,319 - CA265_RS23260 0.65 +0.5
5,686,319 - CA265_RS23260 0.65 -0.3
5,686,319 - CA265_RS23260 0.65 +0.8
5,686,333 + CA265_RS23260 0.67 +0.3
5,686,344 + CA265_RS23260 0.68 +0.3
5,686,467 - CA265_RS23260 0.84 +0.4
5,686,526 - +0.4
5,686,596 - +0.4
5,686,598 + +0.8
5,686,633 - +0.1
5,686,660 - +0.1
5,686,683 + -0.4
5,686,695 + +0.5
5,686,696 - +0.7
5,686,730 - -0.1
5,686,732 - -0.4
5,686,740 + -0.8
5,686,740 + +0.1
5,686,742 + -0.0
5,686,801 - -0.6
5,686,884 + CA265_RS23265 0.51 -0.5
5,686,899 + CA265_RS23265 0.57 -1.2
5,686,906 + CA265_RS23265 0.60 -0.6
5,686,996 + -0.5
5,686,996 + +0.6
5,686,997 - -0.3
5,687,019 + +0.4
5,687,075 + -0.8
5,687,080 + -0.5
5,687,081 - -1.7
5,687,081 - +0.7
5,687,102 - +0.4
5,687,139 - -0.8
5,687,246 - CA265_RS23270 0.24 -0.7
5,687,256 + CA265_RS23270 0.26 -0.2
5,687,286 + CA265_RS23270 0.30 -0.1
5,687,287 - CA265_RS23270 0.30 -0.2
5,687,362 + CA265_RS23270 0.41 +0.2
5,687,363 - CA265_RS23270 0.42 -0.9
5,687,436 - CA265_RS23270 0.52 +0.8
5,687,479 - CA265_RS23270 0.58 +0.4
5,687,532 + CA265_RS23270 0.66 -0.5
5,687,532 + CA265_RS23270 0.66 -0.2
5,687,533 - CA265_RS23270 0.66 -0.1

Or see this region's nucleotide sequence