Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23200

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23190 and CA265_RS23195 are separated by 88 nucleotidesCA265_RS23195 and CA265_RS23200 are separated by 57 nucleotidesCA265_RS23200 and CA265_RS23205 are separated by 192 nucleotidesCA265_RS23205 and CA265_RS23210 overlap by 4 nucleotides CA265_RS23190: CA265_RS23190 - transcription elongation factor GreA, at 5,674,061 to 5,674,534 _RS23190 CA265_RS23195: CA265_RS23195 - HIT family protein, at 5,674,623 to 5,675,021 _RS23195 CA265_RS23200: CA265_RS23200 - hypothetical protein, at 5,675,079 to 5,675,939 _RS23200 CA265_RS23205: CA265_RS23205 - hypothetical protein, at 5,676,132 to 5,676,758 _RS23205 CA265_RS23210: CA265_RS23210 - hypothetical protein, at 5,676,755 to 5,677,945 _RS23210 Position (kb) 5675 5676Strain fitness (log2 ratio) -3 -2 -1 0 1at 5674.105 kb on - strandat 5674.150 kb on - strand, within CA265_RS23190at 5674.153 kb on + strand, within CA265_RS23190at 5674.264 kb on + strand, within CA265_RS23190at 5674.298 kb on - strand, within CA265_RS23190at 5674.374 kb on - strand, within CA265_RS23190at 5674.456 kb on + strand, within CA265_RS23190at 5674.457 kb on - strand, within CA265_RS23190at 5674.524 kb on + strandat 5674.524 kb on + strandat 5674.532 kb on + strandat 5674.537 kb on + strandat 5674.537 kb on + strandat 5674.538 kb on - strandat 5674.560 kb on + strandat 5674.560 kb on + strandat 5674.560 kb on + strandat 5674.593 kb on + strandat 5674.594 kb on - strandat 5674.601 kb on - strandat 5674.615 kb on - strandat 5674.621 kb on + strandat 5674.689 kb on + strand, within CA265_RS23195at 5674.690 kb on - strand, within CA265_RS23195at 5674.702 kb on + strand, within CA265_RS23195at 5674.703 kb on - strand, within CA265_RS23195at 5674.788 kb on + strand, within CA265_RS23195at 5674.788 kb on + strand, within CA265_RS23195at 5674.788 kb on + strand, within CA265_RS23195at 5674.788 kb on + strand, within CA265_RS23195at 5674.898 kb on + strand, within CA265_RS23195at 5674.899 kb on - strand, within CA265_RS23195at 5674.899 kb on - strand, within CA265_RS23195at 5674.899 kb on - strand, within CA265_RS23195at 5674.899 kb on - strand, within CA265_RS23195at 5674.899 kb on - strand, within CA265_RS23195at 5674.944 kb on - strand, within CA265_RS23195at 5675.019 kb on + strandat 5675.100 kb on - strandat 5675.106 kb on + strandat 5675.112 kb on + strandat 5675.194 kb on + strand, within CA265_RS23200at 5675.195 kb on - strand, within CA265_RS23200at 5675.212 kb on + strand, within CA265_RS23200at 5675.213 kb on - strand, within CA265_RS23200at 5675.213 kb on - strand, within CA265_RS23200at 5675.246 kb on + strand, within CA265_RS23200at 5675.247 kb on - strand, within CA265_RS23200at 5675.247 kb on - strand, within CA265_RS23200at 5675.343 kb on - strand, within CA265_RS23200at 5675.344 kb on + strand, within CA265_RS23200at 5675.348 kb on + strand, within CA265_RS23200at 5675.352 kb on + strand, within CA265_RS23200at 5675.353 kb on - strand, within CA265_RS23200at 5675.380 kb on + strand, within CA265_RS23200at 5675.380 kb on + strand, within CA265_RS23200at 5675.380 kb on + strand, within CA265_RS23200at 5675.388 kb on - strandat 5675.411 kb on - strand, within CA265_RS23200at 5675.437 kb on + strand, within CA265_RS23200at 5675.438 kb on - strand, within CA265_RS23200at 5675.450 kb on - strand, within CA265_RS23200at 5675.508 kb on - strand, within CA265_RS23200at 5675.572 kb on + strand, within CA265_RS23200at 5675.575 kb on + strand, within CA265_RS23200at 5675.575 kb on + strand, within CA265_RS23200at 5675.575 kb on + strand, within CA265_RS23200at 5675.596 kb on + strand, within CA265_RS23200at 5675.597 kb on - strand, within CA265_RS23200at 5675.600 kb on + strand, within CA265_RS23200at 5675.684 kb on - strand, within CA265_RS23200at 5675.781 kb on + strand, within CA265_RS23200at 5675.785 kb on - strand, within CA265_RS23200at 5675.929 kb on + strandat 5675.934 kb on + strandat 5675.962 kb on + strandat 5675.976 kb on - strandat 5675.987 kb on - strandat 5676.108 kb on + strandat 5676.162 kb on - strandat 5676.162 kb on - strandat 5676.167 kb on - strandat 5676.177 kb on - strandat 5676.234 kb on + strand, within CA265_RS23205at 5676.237 kb on - strand, within CA265_RS23205at 5676.251 kb on + strand, within CA265_RS23205at 5676.252 kb on - strand, within CA265_RS23205at 5676.324 kb on - strand, within CA265_RS23205at 5676.339 kb on + strand, within CA265_RS23205at 5676.347 kb on + strand, within CA265_RS23205at 5676.348 kb on - strand, within CA265_RS23205at 5676.377 kb on + strand, within CA265_RS23205at 5676.379 kb on + strand, within CA265_RS23205at 5676.379 kb on + strand, within CA265_RS23205at 5676.379 kb on + strand, within CA265_RS23205at 5676.437 kb on - strand, within CA265_RS23205at 5676.437 kb on - strand, within CA265_RS23205at 5676.490 kb on + strand, within CA265_RS23205at 5676.490 kb on + strand, within CA265_RS23205at 5676.496 kb on - strand, within CA265_RS23205at 5676.575 kb on + strand, within CA265_RS23205at 5676.576 kb on - strand, within CA265_RS23205at 5676.576 kb on - strand, within CA265_RS23205at 5676.613 kb on + strand, within CA265_RS23205at 5676.617 kb on + strand, within CA265_RS23205at 5676.617 kb on + strand, within CA265_RS23205at 5676.617 kb on + strand, within CA265_RS23205at 5676.618 kb on - strand, within CA265_RS23205at 5676.728 kb on - strandat 5676.728 kb on - strandat 5676.733 kb on + strandat 5676.749 kb on + strandat 5676.749 kb on + strandat 5676.773 kb on - strandat 5676.778 kb on + strandat 5676.779 kb on - strandat 5676.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,674,105 - +1.0
5,674,150 - CA265_RS23190 0.19 +0.6
5,674,153 + CA265_RS23190 0.19 -1.2
5,674,264 + CA265_RS23190 0.43 +0.3
5,674,298 - CA265_RS23190 0.50 +1.0
5,674,374 - CA265_RS23190 0.66 -0.2
5,674,456 + CA265_RS23190 0.83 -0.0
5,674,457 - CA265_RS23190 0.84 -1.1
5,674,524 + +0.3
5,674,524 + -1.1
5,674,532 + +0.2
5,674,537 + -0.3
5,674,537 + -0.7
5,674,538 - +0.3
5,674,560 + -0.0
5,674,560 + -0.0
5,674,560 + -0.9
5,674,593 + -0.0
5,674,594 - -0.1
5,674,601 - -0.2
5,674,615 - -0.4
5,674,621 + +0.2
5,674,689 + CA265_RS23195 0.17 -0.5
5,674,690 - CA265_RS23195 0.17 -1.7
5,674,702 + CA265_RS23195 0.20 +0.2
5,674,703 - CA265_RS23195 0.20 -0.6
5,674,788 + CA265_RS23195 0.41 -1.5
5,674,788 + CA265_RS23195 0.41 -0.9
5,674,788 + CA265_RS23195 0.41 +0.3
5,674,788 + CA265_RS23195 0.41 -0.3
5,674,898 + CA265_RS23195 0.69 -0.5
5,674,899 - CA265_RS23195 0.69 -0.3
5,674,899 - CA265_RS23195 0.69 -0.1
5,674,899 - CA265_RS23195 0.69 -0.2
5,674,899 - CA265_RS23195 0.69 +0.9
5,674,899 - CA265_RS23195 0.69 -0.0
5,674,944 - CA265_RS23195 0.80 +0.1
5,675,019 + -0.6
5,675,100 - -1.4
5,675,106 + +0.6
5,675,112 + -0.4
5,675,194 + CA265_RS23200 0.13 +0.7
5,675,195 - CA265_RS23200 0.13 +1.3
5,675,212 + CA265_RS23200 0.15 +0.1
5,675,213 - CA265_RS23200 0.16 +0.4
5,675,213 - CA265_RS23200 0.16 -0.7
5,675,246 + CA265_RS23200 0.19 -0.8
5,675,247 - CA265_RS23200 0.20 -0.5
5,675,247 - CA265_RS23200 0.20 -2.8
5,675,343 - CA265_RS23200 0.31 -1.3
5,675,344 + CA265_RS23200 0.31 -0.7
5,675,348 + CA265_RS23200 0.31 -0.9
5,675,352 + CA265_RS23200 0.32 -0.5
5,675,353 - CA265_RS23200 0.32 -0.3
5,675,380 + CA265_RS23200 0.35 -0.2
5,675,380 + CA265_RS23200 0.35 -2.5
5,675,380 + CA265_RS23200 0.35 +0.2
5,675,388 - -0.3
5,675,411 - CA265_RS23200 0.39 -1.6
5,675,437 + CA265_RS23200 0.42 -1.4
5,675,438 - CA265_RS23200 0.42 -1.2
5,675,450 - CA265_RS23200 0.43 -1.4
5,675,508 - CA265_RS23200 0.50 -0.1
5,675,572 + CA265_RS23200 0.57 -0.8
5,675,575 + CA265_RS23200 0.58 -0.4
5,675,575 + CA265_RS23200 0.58 -0.3
5,675,575 + CA265_RS23200 0.58 +0.5
5,675,596 + CA265_RS23200 0.60 -0.1
5,675,597 - CA265_RS23200 0.60 -0.1
5,675,600 + CA265_RS23200 0.61 +1.4
5,675,684 - CA265_RS23200 0.70 -0.3
5,675,781 + CA265_RS23200 0.82 +0.4
5,675,785 - CA265_RS23200 0.82 +0.1
5,675,929 + +0.1
5,675,934 + +0.6
5,675,962 + -0.2
5,675,976 - +0.1
5,675,987 - +1.0
5,676,108 + +0.2
5,676,162 - -0.4
5,676,162 - -0.6
5,676,167 - +0.2
5,676,177 - -0.0
5,676,234 + CA265_RS23205 0.16 +0.0
5,676,237 - CA265_RS23205 0.17 +0.4
5,676,251 + CA265_RS23205 0.19 -0.2
5,676,252 - CA265_RS23205 0.19 -0.6
5,676,324 - CA265_RS23205 0.31 -0.1
5,676,339 + CA265_RS23205 0.33 -0.3
5,676,347 + CA265_RS23205 0.34 +0.1
5,676,348 - CA265_RS23205 0.34 +0.4
5,676,377 + CA265_RS23205 0.39 -0.0
5,676,379 + CA265_RS23205 0.39 +0.4
5,676,379 + CA265_RS23205 0.39 +0.2
5,676,379 + CA265_RS23205 0.39 -0.5
5,676,437 - CA265_RS23205 0.49 +0.4
5,676,437 - CA265_RS23205 0.49 -0.8
5,676,490 + CA265_RS23205 0.57 +0.1
5,676,490 + CA265_RS23205 0.57 -0.0
5,676,496 - CA265_RS23205 0.58 -1.0
5,676,575 + CA265_RS23205 0.71 -0.9
5,676,576 - CA265_RS23205 0.71 +0.2
5,676,576 - CA265_RS23205 0.71 +1.0
5,676,613 + CA265_RS23205 0.77 -0.6
5,676,617 + CA265_RS23205 0.77 -0.0
5,676,617 + CA265_RS23205 0.77 +1.4
5,676,617 + CA265_RS23205 0.77 -0.7
5,676,618 - CA265_RS23205 0.78 -0.0
5,676,728 - -0.3
5,676,728 - -1.0
5,676,733 + -0.2
5,676,749 + -0.6
5,676,749 + +0.4
5,676,773 - +0.9
5,676,778 + -0.0
5,676,779 - +0.7
5,676,829 - -0.2

Or see this region's nucleotide sequence