Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23140

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23130 and CA265_RS23135 are separated by 1 nucleotidesCA265_RS23135 and CA265_RS23140 are separated by 4 nucleotidesCA265_RS23140 and CA265_RS23145 are separated by 319 nucleotides CA265_RS23130: CA265_RS23130 - ABC transporter permease, at 5,658,886 to 5,659,683 _RS23130 CA265_RS23135: CA265_RS23135 - ABC transporter ATP-binding protein, at 5,659,685 to 5,660,593 _RS23135 CA265_RS23140: CA265_RS23140 - hypothetical protein, at 5,660,598 to 5,660,855 _RS23140 CA265_RS23145: CA265_RS23145 - hypothetical protein, at 5,661,175 to 5,662,152 _RS23145 Position (kb) 5660 5661Strain fitness (log2 ratio) -1 0 1 2 3at 5659.668 kb on + strandat 5659.699 kb on + strandat 5659.702 kb on + strandat 5659.817 kb on + strand, within CA265_RS23135at 5659.819 kb on + strand, within CA265_RS23135at 5659.823 kb on - strand, within CA265_RS23135at 5659.826 kb on + strand, within CA265_RS23135at 5659.827 kb on - strand, within CA265_RS23135at 5659.899 kb on - strand, within CA265_RS23135at 5659.976 kb on + strand, within CA265_RS23135at 5659.977 kb on - strand, within CA265_RS23135at 5660.007 kb on - strand, within CA265_RS23135at 5660.018 kb on + strand, within CA265_RS23135at 5660.105 kb on + strand, within CA265_RS23135at 5660.130 kb on - strand, within CA265_RS23135at 5660.132 kb on + strand, within CA265_RS23135at 5660.136 kb on - strand, within CA265_RS23135at 5660.197 kb on - strand, within CA265_RS23135at 5660.197 kb on - strand, within CA265_RS23135at 5660.197 kb on - strand, within CA265_RS23135at 5660.201 kb on - strand, within CA265_RS23135at 5660.284 kb on + strand, within CA265_RS23135at 5660.285 kb on - strand, within CA265_RS23135at 5660.285 kb on - strand, within CA265_RS23135at 5660.285 kb on - strand, within CA265_RS23135at 5660.325 kb on + strand, within CA265_RS23135at 5660.372 kb on + strand, within CA265_RS23135at 5660.495 kb on + strand, within CA265_RS23135at 5660.495 kb on + strand, within CA265_RS23135at 5660.495 kb on + strand, within CA265_RS23135at 5660.496 kb on - strand, within CA265_RS23135at 5660.496 kb on - strand, within CA265_RS23135at 5660.496 kb on - strand, within CA265_RS23135at 5660.497 kb on + strand, within CA265_RS23135at 5660.497 kb on + strand, within CA265_RS23135at 5660.497 kb on + strand, within CA265_RS23135at 5660.510 kb on + strandat 5660.516 kb on + strandat 5660.517 kb on - strandat 5660.561 kb on + strandat 5660.583 kb on + strandat 5660.584 kb on - strandat 5660.594 kb on - strandat 5660.615 kb on + strandat 5660.615 kb on + strandat 5660.661 kb on + strand, within CA265_RS23140at 5660.662 kb on - strand, within CA265_RS23140at 5660.705 kb on + strand, within CA265_RS23140at 5660.706 kb on - strand, within CA265_RS23140at 5660.724 kb on + strand, within CA265_RS23140at 5660.731 kb on - strand, within CA265_RS23140at 5660.830 kb on - strandat 5660.914 kb on + strandat 5660.916 kb on + strandat 5661.021 kb on + strandat 5661.046 kb on - strandat 5661.067 kb on + strandat 5661.147 kb on - strandat 5661.154 kb on - strandat 5661.238 kb on - strandat 5661.283 kb on - strand, within CA265_RS23145at 5661.289 kb on - strand, within CA265_RS23145at 5661.417 kb on - strand, within CA265_RS23145at 5661.652 kb on - strand, within CA265_RS23145at 5661.707 kb on - strand, within CA265_RS23145

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,659,668 + +0.2
5,659,699 + +0.4
5,659,702 + +0.7
5,659,817 + CA265_RS23135 0.15 +0.5
5,659,819 + CA265_RS23135 0.15 -0.3
5,659,823 - CA265_RS23135 0.15 -0.3
5,659,826 + CA265_RS23135 0.16 +0.2
5,659,827 - CA265_RS23135 0.16 +0.1
5,659,899 - CA265_RS23135 0.24 +0.7
5,659,976 + CA265_RS23135 0.32 -0.6
5,659,977 - CA265_RS23135 0.32 -1.0
5,660,007 - CA265_RS23135 0.35 +3.0
5,660,018 + CA265_RS23135 0.37 +0.0
5,660,105 + CA265_RS23135 0.46 -0.7
5,660,130 - CA265_RS23135 0.49 +0.4
5,660,132 + CA265_RS23135 0.49 -0.4
5,660,136 - CA265_RS23135 0.50 -0.3
5,660,197 - CA265_RS23135 0.56 +1.6
5,660,197 - CA265_RS23135 0.56 -0.5
5,660,197 - CA265_RS23135 0.56 +0.3
5,660,201 - CA265_RS23135 0.57 +1.5
5,660,284 + CA265_RS23135 0.66 +0.5
5,660,285 - CA265_RS23135 0.66 +1.7
5,660,285 - CA265_RS23135 0.66 -0.2
5,660,285 - CA265_RS23135 0.66 +0.9
5,660,325 + CA265_RS23135 0.70 +0.6
5,660,372 + CA265_RS23135 0.76 -0.1
5,660,495 + CA265_RS23135 0.89 +0.2
5,660,495 + CA265_RS23135 0.89 +1.2
5,660,495 + CA265_RS23135 0.89 -0.1
5,660,496 - CA265_RS23135 0.89 +1.3
5,660,496 - CA265_RS23135 0.89 +0.4
5,660,496 - CA265_RS23135 0.89 +0.1
5,660,497 + CA265_RS23135 0.89 +0.5
5,660,497 + CA265_RS23135 0.89 -0.1
5,660,497 + CA265_RS23135 0.89 +0.5
5,660,510 + -0.8
5,660,516 + +0.2
5,660,517 - -1.2
5,660,561 + -0.6
5,660,583 + +0.0
5,660,584 - -0.2
5,660,594 - -0.4
5,660,615 + -0.2
5,660,615 + -0.2
5,660,661 + CA265_RS23140 0.24 +0.6
5,660,662 - CA265_RS23140 0.25 +0.4
5,660,705 + CA265_RS23140 0.41 -0.1
5,660,706 - CA265_RS23140 0.42 +0.9
5,660,724 + CA265_RS23140 0.49 +0.8
5,660,731 - CA265_RS23140 0.52 -0.2
5,660,830 - +2.0
5,660,914 + +2.0
5,660,916 + +0.5
5,661,021 + -0.1
5,661,046 - +0.4
5,661,067 + +0.2
5,661,147 - -0.1
5,661,154 - +0.8
5,661,238 - -0.6
5,661,283 - CA265_RS23145 0.11 -0.4
5,661,289 - CA265_RS23145 0.12 +1.1
5,661,417 - CA265_RS23145 0.25 +0.5
5,661,652 - CA265_RS23145 0.49 -0.9
5,661,707 - CA265_RS23145 0.54 -0.2

Or see this region's nucleotide sequence