Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22585

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22580 and CA265_RS22585 are separated by 6 nucleotidesCA265_RS22585 and CA265_RS22590 are separated by 13 nucleotidesCA265_RS22590 and CA265_RS22595 overlap by 10 nucleotides CA265_RS22580: CA265_RS22580 - short-chain dehydrogenase, at 5,533,280 to 5,534,155 _RS22580 CA265_RS22585: CA265_RS22585 - hypothetical protein, at 5,534,162 to 5,534,557 _RS22585 CA265_RS22590: CA265_RS22590 - hypothetical protein, at 5,534,571 to 5,535,308 _RS22590 CA265_RS22595: CA265_RS22595 - methyltransferase type 11, at 5,535,299 to 5,536,051 _RS22595 Position (kb) 5534 5535Strain fitness (log2 ratio) -2 -1 0 1 2at 5533.257 kb on + strandat 5533.266 kb on - strandat 5533.279 kb on + strandat 5533.289 kb on + strandat 5533.289 kb on + strandat 5533.339 kb on - strandat 5533.382 kb on + strand, within CA265_RS22580at 5533.383 kb on - strand, within CA265_RS22580at 5533.383 kb on - strand, within CA265_RS22580at 5533.434 kb on + strand, within CA265_RS22580at 5533.483 kb on - strand, within CA265_RS22580at 5533.504 kb on + strand, within CA265_RS22580at 5533.513 kb on - strand, within CA265_RS22580at 5533.599 kb on + strand, within CA265_RS22580at 5533.600 kb on - strand, within CA265_RS22580at 5533.676 kb on - strand, within CA265_RS22580at 5533.676 kb on - strand, within CA265_RS22580at 5533.681 kb on + strand, within CA265_RS22580at 5533.681 kb on + strand, within CA265_RS22580at 5533.681 kb on + strand, within CA265_RS22580at 5533.682 kb on - strand, within CA265_RS22580at 5533.732 kb on + strand, within CA265_RS22580at 5533.733 kb on - strand, within CA265_RS22580at 5533.745 kb on + strand, within CA265_RS22580at 5533.746 kb on - strand, within CA265_RS22580at 5533.821 kb on + strand, within CA265_RS22580at 5533.841 kb on + strand, within CA265_RS22580at 5533.842 kb on - strand, within CA265_RS22580at 5533.842 kb on - strand, within CA265_RS22580at 5533.842 kb on - strand, within CA265_RS22580at 5533.842 kb on - strand, within CA265_RS22580at 5533.905 kb on + strand, within CA265_RS22580at 5534.024 kb on + strand, within CA265_RS22580at 5534.024 kb on + strand, within CA265_RS22580at 5534.026 kb on + strand, within CA265_RS22580at 5534.027 kb on - strand, within CA265_RS22580at 5534.045 kb on - strand, within CA265_RS22580at 5534.265 kb on + strand, within CA265_RS22585at 5534.318 kb on + strand, within CA265_RS22585at 5534.342 kb on - strand, within CA265_RS22585at 5534.343 kb on + strand, within CA265_RS22585at 5534.344 kb on - strand, within CA265_RS22585at 5534.344 kb on - strand, within CA265_RS22585at 5534.349 kb on + strand, within CA265_RS22585at 5534.362 kb on + strand, within CA265_RS22585at 5534.433 kb on + strand, within CA265_RS22585at 5534.470 kb on - strand, within CA265_RS22585at 5534.488 kb on + strand, within CA265_RS22585at 5534.489 kb on - strand, within CA265_RS22585at 5534.528 kb on - strandat 5534.673 kb on - strand, within CA265_RS22590at 5534.709 kb on - strand, within CA265_RS22590at 5534.732 kb on + strand, within CA265_RS22590at 5534.858 kb on - strand, within CA265_RS22590at 5534.924 kb on + strand, within CA265_RS22590at 5534.925 kb on - strand, within CA265_RS22590at 5534.928 kb on + strand, within CA265_RS22590at 5534.929 kb on - strand, within CA265_RS22590at 5534.966 kb on + strand, within CA265_RS22590at 5534.967 kb on - strand, within CA265_RS22590at 5535.112 kb on - strand, within CA265_RS22590at 5535.195 kb on - strand, within CA265_RS22590at 5535.270 kb on + strandat 5535.349 kb on + strandat 5535.363 kb on - strandat 5535.366 kb on + strandat 5535.412 kb on - strand, within CA265_RS22595at 5535.412 kb on - strand, within CA265_RS22595at 5535.428 kb on - strand, within CA265_RS22595at 5535.450 kb on + strand, within CA265_RS22595at 5535.494 kb on + strand, within CA265_RS22595at 5535.516 kb on - strand, within CA265_RS22595at 5535.550 kb on + strand, within CA265_RS22595

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,533,257 + -0.2
5,533,266 - +0.5
5,533,279 + -0.6
5,533,289 + -0.1
5,533,289 + -0.5
5,533,339 - +0.2
5,533,382 + CA265_RS22580 0.12 -0.1
5,533,383 - CA265_RS22580 0.12 +0.2
5,533,383 - CA265_RS22580 0.12 -1.0
5,533,434 + CA265_RS22580 0.18 -0.1
5,533,483 - CA265_RS22580 0.23 +0.2
5,533,504 + CA265_RS22580 0.26 +0.1
5,533,513 - CA265_RS22580 0.27 -0.8
5,533,599 + CA265_RS22580 0.36 +1.2
5,533,600 - CA265_RS22580 0.37 -0.3
5,533,676 - CA265_RS22580 0.45 +1.1
5,533,676 - CA265_RS22580 0.45 +0.0
5,533,681 + CA265_RS22580 0.46 -0.3
5,533,681 + CA265_RS22580 0.46 +0.1
5,533,681 + CA265_RS22580 0.46 +1.0
5,533,682 - CA265_RS22580 0.46 -0.5
5,533,732 + CA265_RS22580 0.52 +0.6
5,533,733 - CA265_RS22580 0.52 -1.9
5,533,745 + CA265_RS22580 0.53 -1.8
5,533,746 - CA265_RS22580 0.53 -0.1
5,533,821 + CA265_RS22580 0.62 -0.1
5,533,841 + CA265_RS22580 0.64 +0.8
5,533,842 - CA265_RS22580 0.64 -0.6
5,533,842 - CA265_RS22580 0.64 -0.4
5,533,842 - CA265_RS22580 0.64 -0.2
5,533,842 - CA265_RS22580 0.64 +0.1
5,533,905 + CA265_RS22580 0.71 +0.6
5,534,024 + CA265_RS22580 0.85 +0.0
5,534,024 + CA265_RS22580 0.85 +0.6
5,534,026 + CA265_RS22580 0.85 +1.9
5,534,027 - CA265_RS22580 0.85 -0.8
5,534,045 - CA265_RS22580 0.87 -0.5
5,534,265 + CA265_RS22585 0.26 -0.4
5,534,318 + CA265_RS22585 0.39 +1.2
5,534,342 - CA265_RS22585 0.45 +0.5
5,534,343 + CA265_RS22585 0.46 -0.0
5,534,344 - CA265_RS22585 0.46 +0.3
5,534,344 - CA265_RS22585 0.46 +1.9
5,534,349 + CA265_RS22585 0.47 +0.3
5,534,362 + CA265_RS22585 0.51 -1.7
5,534,433 + CA265_RS22585 0.68 -0.4
5,534,470 - CA265_RS22585 0.78 +0.4
5,534,488 + CA265_RS22585 0.82 +1.2
5,534,489 - CA265_RS22585 0.83 +0.1
5,534,528 - -2.0
5,534,673 - CA265_RS22590 0.14 -0.2
5,534,709 - CA265_RS22590 0.19 -0.6
5,534,732 + CA265_RS22590 0.22 +0.0
5,534,858 - CA265_RS22590 0.39 +0.0
5,534,924 + CA265_RS22590 0.48 -0.3
5,534,925 - CA265_RS22590 0.48 +0.6
5,534,928 + CA265_RS22590 0.48 +1.2
5,534,929 - CA265_RS22590 0.49 -0.4
5,534,966 + CA265_RS22590 0.54 +0.0
5,534,967 - CA265_RS22590 0.54 -0.5
5,535,112 - CA265_RS22590 0.73 -1.4
5,535,195 - CA265_RS22590 0.85 +0.5
5,535,270 + -0.4
5,535,349 + +0.8
5,535,363 - +0.0
5,535,366 + -0.1
5,535,412 - CA265_RS22595 0.15 +0.8
5,535,412 - CA265_RS22595 0.15 +0.6
5,535,428 - CA265_RS22595 0.17 +0.8
5,535,450 + CA265_RS22595 0.20 +0.3
5,535,494 + CA265_RS22595 0.26 -0.1
5,535,516 - CA265_RS22595 0.29 -0.1
5,535,550 + CA265_RS22595 0.33 +0.3

Or see this region's nucleotide sequence