Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21215 and CA265_RS21220 are separated by 309 nucleotides CA265_RS21220 and CA265_RS21225 are separated by 99 nucleotides
CA265_RS21215: CA265_RS21215 - hypothetical protein, at 5,224,949 to 5,228,266
_RS21215
CA265_RS21220: CA265_RS21220 - hypothetical protein, at 5,228,576 to 5,229,124
_RS21220
CA265_RS21225: CA265_RS21225 - hypothetical protein, at 5,229,224 to 5,230,282
_RS21225
Position (kb) 5228
5229
5230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5227.616 kb on + strand, within CA265_RS21215 at 5227.667 kb on - strand, within CA265_RS21215 at 5227.698 kb on + strand, within CA265_RS21215 at 5227.713 kb on + strand, within CA265_RS21215 at 5227.732 kb on + strand, within CA265_RS21215 at 5227.753 kb on + strand, within CA265_RS21215 at 5227.879 kb on + strand, within CA265_RS21215 at 5227.879 kb on + strand, within CA265_RS21215 at 5227.879 kb on + strand, within CA265_RS21215 at 5227.926 kb on - strand, within CA265_RS21215 at 5227.931 kb on - strand, within CA265_RS21215 at 5228.062 kb on + strand at 5228.124 kb on + strand at 5228.148 kb on + strand at 5228.175 kb on + strand at 5228.176 kb on - strand at 5228.205 kb on + strand at 5228.229 kb on - strand at 5228.229 kb on - strand at 5228.250 kb on + strand at 5228.255 kb on - strand at 5228.266 kb on + strand at 5228.266 kb on + strand at 5228.287 kb on - strand at 5228.292 kb on + strand at 5228.359 kb on - strand at 5228.453 kb on + strand at 5228.489 kb on + strand at 5228.551 kb on + strand at 5228.552 kb on - strand at 5228.552 kb on - strand at 5228.553 kb on + strand at 5228.574 kb on + strand at 5228.661 kb on - strand, within CA265_RS21220 at 5228.665 kb on - strand, within CA265_RS21220 at 5228.713 kb on + strand, within CA265_RS21220 at 5228.714 kb on - strand, within CA265_RS21220 at 5228.759 kb on + strand, within CA265_RS21220 at 5228.759 kb on + strand, within CA265_RS21220 at 5228.760 kb on - strand, within CA265_RS21220 at 5228.761 kb on + strand, within CA265_RS21220 at 5228.761 kb on + strand, within CA265_RS21220 at 5228.762 kb on - strand, within CA265_RS21220 at 5228.766 kb on + strand, within CA265_RS21220 at 5228.961 kb on + strand, within CA265_RS21220 at 5229.010 kb on + strand, within CA265_RS21220 at 5229.040 kb on - strand, within CA265_RS21220 at 5229.527 kb on - strand, within CA265_RS21225 at 5229.545 kb on - strand, within CA265_RS21225 at 5229.551 kb on - strand, within CA265_RS21225 at 5229.596 kb on - strand, within CA265_RS21225 at 5229.610 kb on + strand, within CA265_RS21225 at 5229.611 kb on - strand, within CA265_RS21225 at 5229.622 kb on - strand, within CA265_RS21225 at 5229.652 kb on + strand, within CA265_RS21225 at 5229.653 kb on - strand, within CA265_RS21225 at 5229.686 kb on + strand, within CA265_RS21225 at 5229.808 kb on - strand, within CA265_RS21225 at 5229.812 kb on - strand, within CA265_RS21225 at 5229.853 kb on + strand, within CA265_RS21225 at 5229.899 kb on - strand, within CA265_RS21225 at 5229.899 kb on - strand, within CA265_RS21225 at 5229.933 kb on + strand, within CA265_RS21225 at 5229.952 kb on + strand, within CA265_RS21225 at 5229.971 kb on + strand, within CA265_RS21225 at 5229.971 kb on + strand, within CA265_RS21225 at 5229.998 kb on - strand, within CA265_RS21225 at 5230.009 kb on + strand, within CA265_RS21225 at 5230.043 kb on - strand, within CA265_RS21225 at 5230.043 kb on - strand, within CA265_RS21225
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,227,616 + CA265_RS21215 0.80 -0.5 5,227,667 - CA265_RS21215 0.82 -0.1 5,227,698 + CA265_RS21215 0.83 -1.4 5,227,713 + CA265_RS21215 0.83 -2.2 5,227,732 + CA265_RS21215 0.84 -0.6 5,227,753 + CA265_RS21215 0.85 +0.7 5,227,879 + CA265_RS21215 0.88 +2.1 5,227,879 + CA265_RS21215 0.88 +1.2 5,227,879 + CA265_RS21215 0.88 -0.0 5,227,926 - CA265_RS21215 0.90 +0.7 5,227,931 - CA265_RS21215 0.90 +0.7 5,228,062 + -2.6 5,228,124 + -1.4 5,228,148 + +0.2 5,228,175 + -0.8 5,228,176 - +1.1 5,228,205 + +0.3 5,228,229 - -0.7 5,228,229 - -0.3 5,228,250 + +0.8 5,228,255 - -0.2 5,228,266 + -1.2 5,228,266 + -1.6 5,228,287 - -0.2 5,228,292 + +0.3 5,228,359 - +0.1 5,228,453 + -0.3 5,228,489 + -0.2 5,228,551 + -0.2 5,228,552 - -0.1 5,228,552 - +0.6 5,228,553 + -2.1 5,228,574 + -0.2 5,228,661 - CA265_RS21220 0.15 +1.5 5,228,665 - CA265_RS21220 0.16 -0.2 5,228,713 + CA265_RS21220 0.25 +1.6 5,228,714 - CA265_RS21220 0.25 -1.5 5,228,759 + CA265_RS21220 0.33 -0.2 5,228,759 + CA265_RS21220 0.33 +1.3 5,228,760 - CA265_RS21220 0.34 +1.0 5,228,761 + CA265_RS21220 0.34 +0.4 5,228,761 + CA265_RS21220 0.34 +0.0 5,228,762 - CA265_RS21220 0.34 +0.1 5,228,766 + CA265_RS21220 0.35 -0.1 5,228,961 + CA265_RS21220 0.70 +0.8 5,229,010 + CA265_RS21220 0.79 +1.2 5,229,040 - CA265_RS21220 0.85 +0.0 5,229,527 - CA265_RS21225 0.29 -0.2 5,229,545 - CA265_RS21225 0.30 +0.5 5,229,551 - CA265_RS21225 0.31 -0.0 5,229,596 - CA265_RS21225 0.35 +0.5 5,229,610 + CA265_RS21225 0.36 -0.0 5,229,611 - CA265_RS21225 0.37 -0.2 5,229,622 - CA265_RS21225 0.38 +0.8 5,229,652 + CA265_RS21225 0.40 +1.5 5,229,653 - CA265_RS21225 0.41 -0.8 5,229,686 + CA265_RS21225 0.44 -0.0 5,229,808 - CA265_RS21225 0.55 +0.0 5,229,812 - CA265_RS21225 0.56 +0.8 5,229,853 + CA265_RS21225 0.59 -0.7 5,229,899 - CA265_RS21225 0.64 +0.0 5,229,899 - CA265_RS21225 0.64 +0.3 5,229,933 + CA265_RS21225 0.67 -1.2 5,229,952 + CA265_RS21225 0.69 +0.0 5,229,971 + CA265_RS21225 0.71 +0.3 5,229,971 + CA265_RS21225 0.71 +0.7 5,229,998 - CA265_RS21225 0.73 -0.9 5,230,009 + CA265_RS21225 0.74 +0.9 5,230,043 - CA265_RS21225 0.77 +0.7 5,230,043 - CA265_RS21225 0.77 -1.7
Or see this region's nucleotide sequence