Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20790 and CA265_RS20795 are separated by 37 nucleotides CA265_RS20795 and CA265_RS20800 are separated by 15 nucleotides CA265_RS20800 and CA265_RS20805 are separated by 18 nucleotides CA265_RS20805 and CA265_RS20810 are separated by 109 nucleotides
CA265_RS20790: CA265_RS20790 - hypothetical protein, at 5,133,201 to 5,134,058
_RS20790
CA265_RS20795: CA265_RS20795 - hypothetical protein, at 5,134,096 to 5,134,950
_RS20795
CA265_RS20800: CA265_RS20800 - hypothetical protein, at 5,134,966 to 5,135,166
_RS20800
CA265_RS20805: CA265_RS20805 - methyltransferase, at 5,135,185 to 5,136,048
_RS20805
CA265_RS20810: CA265_RS20810 - hypothetical protein, at 5,136,158 to 5,136,586
_RS20810
Position (kb) 5134
5135
5136 Strain fitness (log2 ratio) -1
0
1 at 5134.016 kb on + strand at 5134.117 kb on + strand at 5134.138 kb on + strand at 5134.139 kb on - strand at 5134.272 kb on + strand, within CA265_RS20795 at 5134.273 kb on - strand, within CA265_RS20795 at 5134.322 kb on - strand, within CA265_RS20795 at 5134.330 kb on - strand, within CA265_RS20795 at 5134.339 kb on - strand, within CA265_RS20795 at 5134.346 kb on - strand, within CA265_RS20795 at 5134.525 kb on - strand, within CA265_RS20795 at 5134.530 kb on - strand, within CA265_RS20795 at 5134.530 kb on - strand, within CA265_RS20795 at 5134.574 kb on - strand, within CA265_RS20795 at 5134.659 kb on + strand, within CA265_RS20795 at 5134.660 kb on - strand, within CA265_RS20795 at 5134.660 kb on - strand, within CA265_RS20795 at 5134.763 kb on + strand, within CA265_RS20795 at 5134.764 kb on - strand, within CA265_RS20795 at 5134.764 kb on - strand, within CA265_RS20795 at 5134.918 kb on - strand at 5134.939 kb on - strand at 5135.017 kb on - strand, within CA265_RS20800 at 5135.101 kb on - strand, within CA265_RS20800 at 5135.101 kb on - strand, within CA265_RS20800 at 5135.172 kb on - strand at 5135.355 kb on + strand, within CA265_RS20805 at 5135.355 kb on + strand, within CA265_RS20805 at 5135.381 kb on - strand, within CA265_RS20805 at 5135.473 kb on + strand, within CA265_RS20805 at 5135.474 kb on - strand, within CA265_RS20805 at 5135.476 kb on - strand, within CA265_RS20805 at 5135.593 kb on - strand, within CA265_RS20805 at 5135.743 kb on + strand, within CA265_RS20805 at 5135.744 kb on - strand, within CA265_RS20805 at 5136.038 kb on + strand at 5136.039 kb on - strand at 5136.039 kb on - strand at 5136.043 kb on - strand at 5136.046 kb on + strand at 5136.058 kb on - strand at 5136.061 kb on - strand at 5136.068 kb on + strand at 5136.068 kb on + strand at 5136.068 kb on + strand at 5136.131 kb on + strand at 5136.132 kb on - strand at 5136.152 kb on + strand at 5136.164 kb on + strand at 5136.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,134,016 + -0.8 5,134,117 + -0.1 5,134,138 + +0.2 5,134,139 - -1.1 5,134,272 + CA265_RS20795 0.21 +0.1 5,134,273 - CA265_RS20795 0.21 -0.1 5,134,322 - CA265_RS20795 0.26 +1.1 5,134,330 - CA265_RS20795 0.27 +0.0 5,134,339 - CA265_RS20795 0.28 -0.1 5,134,346 - CA265_RS20795 0.29 +0.5 5,134,525 - CA265_RS20795 0.50 -0.3 5,134,530 - CA265_RS20795 0.51 +0.9 5,134,530 - CA265_RS20795 0.51 -0.3 5,134,574 - CA265_RS20795 0.56 +1.3 5,134,659 + CA265_RS20795 0.66 +0.9 5,134,660 - CA265_RS20795 0.66 -0.2 5,134,660 - CA265_RS20795 0.66 -0.4 5,134,763 + CA265_RS20795 0.78 -1.0 5,134,764 - CA265_RS20795 0.78 +0.7 5,134,764 - CA265_RS20795 0.78 -0.3 5,134,918 - -0.4 5,134,939 - +0.1 5,135,017 - CA265_RS20800 0.25 +0.4 5,135,101 - CA265_RS20800 0.67 +0.3 5,135,101 - CA265_RS20800 0.67 +0.2 5,135,172 - +0.9 5,135,355 + CA265_RS20805 0.20 -1.1 5,135,355 + CA265_RS20805 0.20 -1.4 5,135,381 - CA265_RS20805 0.23 +0.4 5,135,473 + CA265_RS20805 0.33 +0.3 5,135,474 - CA265_RS20805 0.33 +0.8 5,135,476 - CA265_RS20805 0.34 -0.5 5,135,593 - CA265_RS20805 0.47 +0.2 5,135,743 + CA265_RS20805 0.65 -1.7 5,135,744 - CA265_RS20805 0.65 +0.8 5,136,038 + -0.1 5,136,039 - -1.1 5,136,039 - -0.2 5,136,043 - +0.9 5,136,046 + +0.3 5,136,058 - -0.6 5,136,061 - +1.0 5,136,068 + -0.3 5,136,068 + +1.4 5,136,068 + +0.8 5,136,131 + -0.9 5,136,132 - -1.7 5,136,152 + +0.5 5,136,164 + +0.9 5,136,165 - +0.1
Or see this region's nucleotide sequence