Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20690 and CA265_RS20695 overlap by 4 nucleotides CA265_RS20695 and CA265_RS20700 are separated by 11 nucleotides CA265_RS20700 and CA265_RS20705 are separated by 33 nucleotides CA265_RS20705 and CA265_RS20710 overlap by 1 nucleotides CA265_RS20710 and CA265_RS20715 overlap by 29 nucleotides
CA265_RS20690: CA265_RS20690 - hypothetical protein, at 5,118,035 to 5,118,415
_RS20690
CA265_RS20695: CA265_RS20695 - hypothetical protein, at 5,118,412 to 5,118,744
_RS20695
CA265_RS20700: CA265_RS20700 - plasmid transfer protein, at 5,118,756 to 5,119,058
_RS20700
CA265_RS20705: CA265_RS20705 - conjugal transfer protein, at 5,119,092 to 5,119,403
_RS20705
CA265_RS20710: CA265_RS20710 - DUF4133 domain-containing protein, at 5,119,403 to 5,119,708
_RS20710
CA265_RS20715: CA265_RS20715 - conjugal transfer protein TraG, at 5,119,680 to 5,122,130
_RS20715
Position (kb) 5119
5120 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5118.279 kb on + strand, within CA265_RS20690 at 5118.327 kb on + strand, within CA265_RS20690 at 5118.429 kb on + strand at 5118.451 kb on + strand, within CA265_RS20695 at 5118.452 kb on - strand, within CA265_RS20695 at 5118.464 kb on - strand, within CA265_RS20695 at 5118.489 kb on - strand, within CA265_RS20695 at 5118.590 kb on + strand, within CA265_RS20695 at 5118.724 kb on - strand at 5118.724 kb on - strand at 5118.739 kb on + strand at 5118.743 kb on - strand at 5118.755 kb on + strand at 5118.796 kb on + strand, within CA265_RS20700 at 5118.797 kb on - strand, within CA265_RS20700 at 5118.830 kb on + strand, within CA265_RS20700 at 5118.830 kb on + strand, within CA265_RS20700 at 5118.895 kb on + strand, within CA265_RS20700 at 5118.896 kb on - strand, within CA265_RS20700 at 5118.945 kb on - strand, within CA265_RS20700 at 5118.945 kb on - strand, within CA265_RS20700 at 5118.986 kb on - strand, within CA265_RS20700 at 5119.087 kb on - strand at 5119.091 kb on + strand at 5119.270 kb on + strand, within CA265_RS20705 at 5119.287 kb on + strand, within CA265_RS20705 at 5119.288 kb on - strand, within CA265_RS20705 at 5119.421 kb on + strand at 5119.421 kb on + strand at 5119.422 kb on - strand at 5119.446 kb on + strand, within CA265_RS20710 at 5119.446 kb on + strand, within CA265_RS20710 at 5119.446 kb on + strand, within CA265_RS20710 at 5119.446 kb on + strand, within CA265_RS20710 at 5119.447 kb on - strand, within CA265_RS20710 at 5119.544 kb on + strand, within CA265_RS20710 at 5119.544 kb on + strand, within CA265_RS20710 at 5119.545 kb on - strand, within CA265_RS20710 at 5119.545 kb on - strand, within CA265_RS20710 at 5119.647 kb on + strand, within CA265_RS20710 at 5119.647 kb on + strand, within CA265_RS20710 at 5119.648 kb on - strand, within CA265_RS20710 at 5119.648 kb on - strand, within CA265_RS20710 at 5119.668 kb on + strand, within CA265_RS20710 at 5119.675 kb on - strand, within CA265_RS20710 at 5119.675 kb on - strand, within CA265_RS20710 at 5119.675 kb on - strand, within CA265_RS20710 at 5119.853 kb on + strand at 5119.853 kb on + strand at 5119.854 kb on - strand at 5119.909 kb on + strand at 5119.909 kb on + strand at 5119.909 kb on + strand at 5119.965 kb on + strand, within CA265_RS20715 at 5119.965 kb on + strand, within CA265_RS20715 at 5120.010 kb on + strand, within CA265_RS20715 at 5120.010 kb on + strand, within CA265_RS20715 at 5120.011 kb on - strand, within CA265_RS20715 at 5120.137 kb on + strand, within CA265_RS20715 at 5120.139 kb on + strand, within CA265_RS20715 at 5120.140 kb on - strand, within CA265_RS20715 at 5120.140 kb on - strand, within CA265_RS20715 at 5120.268 kb on - strand, within CA265_RS20715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,118,279 + CA265_RS20690 0.64 +0.0 5,118,327 + CA265_RS20690 0.77 -0.0 5,118,429 + -0.1 5,118,451 + CA265_RS20695 0.12 -0.6 5,118,452 - CA265_RS20695 0.12 -0.6 5,118,464 - CA265_RS20695 0.16 -0.9 5,118,489 - CA265_RS20695 0.23 -0.0 5,118,590 + CA265_RS20695 0.53 +0.3 5,118,724 - +0.9 5,118,724 - -0.8 5,118,739 + +0.3 5,118,743 - -0.2 5,118,755 + -0.1 5,118,796 + CA265_RS20700 0.13 -2.9 5,118,797 - CA265_RS20700 0.14 -0.2 5,118,830 + CA265_RS20700 0.24 -0.6 5,118,830 + CA265_RS20700 0.24 -0.8 5,118,895 + CA265_RS20700 0.46 +0.1 5,118,896 - CA265_RS20700 0.46 -1.8 5,118,945 - CA265_RS20700 0.62 +0.4 5,118,945 - CA265_RS20700 0.62 +0.9 5,118,986 - CA265_RS20700 0.76 -0.1 5,119,087 - +0.5 5,119,091 + -2.4 5,119,270 + CA265_RS20705 0.57 +0.1 5,119,287 + CA265_RS20705 0.62 -0.6 5,119,288 - CA265_RS20705 0.63 -0.5 5,119,421 + +1.0 5,119,421 + -2.1 5,119,422 - +0.9 5,119,446 + CA265_RS20710 0.14 +1.1 5,119,446 + CA265_RS20710 0.14 +0.3 5,119,446 + CA265_RS20710 0.14 +0.7 5,119,446 + CA265_RS20710 0.14 -2.4 5,119,447 - CA265_RS20710 0.14 -1.2 5,119,544 + CA265_RS20710 0.46 -2.1 5,119,544 + CA265_RS20710 0.46 -1.3 5,119,545 - CA265_RS20710 0.46 -0.1 5,119,545 - CA265_RS20710 0.46 +0.4 5,119,647 + CA265_RS20710 0.80 +0.2 5,119,647 + CA265_RS20710 0.80 +1.0 5,119,648 - CA265_RS20710 0.80 -1.0 5,119,648 - CA265_RS20710 0.80 +0.0 5,119,668 + CA265_RS20710 0.87 -0.5 5,119,675 - CA265_RS20710 0.89 -0.9 5,119,675 - CA265_RS20710 0.89 -0.5 5,119,675 - CA265_RS20710 0.89 -0.5 5,119,853 + +0.5 5,119,853 + +1.3 5,119,854 - -0.7 5,119,909 + -1.2 5,119,909 + -1.6 5,119,909 + +0.3 5,119,965 + CA265_RS20715 0.12 +0.3 5,119,965 + CA265_RS20715 0.12 +0.5 5,120,010 + CA265_RS20715 0.13 -0.6 5,120,010 + CA265_RS20715 0.13 +0.6 5,120,011 - CA265_RS20715 0.14 -1.3 5,120,137 + CA265_RS20715 0.19 -0.2 5,120,139 + CA265_RS20715 0.19 +1.0 5,120,140 - CA265_RS20715 0.19 -0.1 5,120,140 - CA265_RS20715 0.19 +0.2 5,120,268 - CA265_RS20715 0.24 -0.7
Or see this region's nucleotide sequence