Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20580 and CA265_RS20585 are separated by 22 nucleotides CA265_RS20585 and CA265_RS20590 overlap by 4 nucleotides
CA265_RS20580: CA265_RS20580 - hypothetical protein, at 5,090,435 to 5,093,392
_RS20580
CA265_RS20585: CA265_RS20585 - hypothetical protein, at 5,093,415 to 5,093,645
_RS20585
CA265_RS20590: CA265_RS20590 - hypothetical protein, at 5,093,642 to 5,095,966
_RS20590
Position (kb) 5093
5094 Strain fitness (log2 ratio) -1
0
1
2 at 5092.427 kb on + strand, within CA265_RS20580 at 5092.431 kb on + strand, within CA265_RS20580 at 5092.433 kb on + strand, within CA265_RS20580 at 5092.460 kb on + strand, within CA265_RS20580 at 5092.460 kb on + strand, within CA265_RS20580 at 5092.460 kb on + strand, within CA265_RS20580 at 5092.460 kb on + strand, within CA265_RS20580 at 5092.480 kb on + strand, within CA265_RS20580 at 5092.493 kb on + strand, within CA265_RS20580 at 5092.530 kb on + strand, within CA265_RS20580 at 5092.530 kb on + strand at 5092.576 kb on + strand, within CA265_RS20580 at 5092.576 kb on + strand, within CA265_RS20580 at 5092.633 kb on + strand, within CA265_RS20580 at 5092.633 kb on + strand, within CA265_RS20580 at 5092.709 kb on + strand, within CA265_RS20580 at 5092.714 kb on + strand, within CA265_RS20580 at 5092.718 kb on + strand, within CA265_RS20580 at 5092.718 kb on + strand, within CA265_RS20580 at 5093.074 kb on + strand at 5093.122 kb on + strand at 5093.122 kb on + strand at 5093.122 kb on + strand at 5093.177 kb on + strand at 5093.208 kb on + strand at 5093.269 kb on + strand at 5093.269 kb on + strand at 5093.275 kb on + strand at 5093.444 kb on + strand, within CA265_RS20585 at 5093.506 kb on + strand, within CA265_RS20585 at 5093.531 kb on + strand, within CA265_RS20585 at 5093.648 kb on + strand at 5093.732 kb on + strand at 5093.732 kb on + strand at 5093.797 kb on + strand at 5093.799 kb on + strand at 5093.799 kb on + strand at 5093.799 kb on + strand at 5094.028 kb on + strand, within CA265_RS20590 at 5094.214 kb on + strand, within CA265_RS20590 at 5094.231 kb on + strand, within CA265_RS20590 at 5094.231 kb on + strand, within CA265_RS20590 at 5094.265 kb on + strand, within CA265_RS20590 at 5094.265 kb on + strand, within CA265_RS20590 at 5094.265 kb on + strand, within CA265_RS20590 at 5094.480 kb on + strand, within CA265_RS20590 at 5094.537 kb on + strand, within CA265_RS20590 at 5094.539 kb on + strand, within CA265_RS20590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,092,427 + CA265_RS20580 0.67 +1.1 5,092,431 + CA265_RS20580 0.67 +0.4 5,092,433 + CA265_RS20580 0.68 +0.5 5,092,460 + CA265_RS20580 0.68 -0.1 5,092,460 + CA265_RS20580 0.68 +0.2 5,092,460 + CA265_RS20580 0.68 +0.5 5,092,460 + CA265_RS20580 0.68 +0.7 5,092,480 + CA265_RS20580 0.69 -0.2 5,092,493 + CA265_RS20580 0.70 +0.4 5,092,530 + CA265_RS20580 0.71 -0.1 5,092,530 + +2.1 5,092,576 + CA265_RS20580 0.72 -1.5 5,092,576 + CA265_RS20580 0.72 -1.0 5,092,633 + CA265_RS20580 0.74 -0.2 5,092,633 + CA265_RS20580 0.74 -0.1 5,092,709 + CA265_RS20580 0.77 +1.2 5,092,714 + CA265_RS20580 0.77 +0.8 5,092,718 + CA265_RS20580 0.77 +0.8 5,092,718 + CA265_RS20580 0.77 -1.2 5,093,074 + +0.5 5,093,122 + +0.5 5,093,122 + +0.1 5,093,122 + -0.1 5,093,177 + +0.3 5,093,208 + -0.9 5,093,269 + +0.7 5,093,269 + -0.2 5,093,275 + +0.1 5,093,444 + CA265_RS20585 0.13 +0.7 5,093,506 + CA265_RS20585 0.39 +0.1 5,093,531 + CA265_RS20585 0.50 +1.2 5,093,648 + -1.1 5,093,732 + +0.5 5,093,732 + +0.4 5,093,797 + -1.2 5,093,799 + -0.7 5,093,799 + +0.1 5,093,799 + -0.3 5,094,028 + CA265_RS20590 0.17 +0.1 5,094,214 + CA265_RS20590 0.25 -0.5 5,094,231 + CA265_RS20590 0.25 +0.9 5,094,231 + CA265_RS20590 0.25 +0.2 5,094,265 + CA265_RS20590 0.27 -0.9 5,094,265 + CA265_RS20590 0.27 +0.8 5,094,265 + CA265_RS20590 0.27 +1.9 5,094,480 + CA265_RS20590 0.36 +0.2 5,094,537 + CA265_RS20590 0.38 -0.4 5,094,539 + CA265_RS20590 0.39 -0.5
Or see this region's nucleotide sequence