Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20310 and CA265_RS20315 are separated by 630 nucleotides CA265_RS20315 and CA265_RS20320 are separated by 17 nucleotides
CA265_RS20310: CA265_RS20310 - SusC/RagA family TonB-linked outer membrane protein, at 5,016,873 to 5,020,040
_RS20310
CA265_RS20315: CA265_RS20315 - hypothetical protein, at 5,020,671 to 5,022,155
_RS20315
CA265_RS20320: CA265_RS20320 - hypothetical protein, at 5,022,173 to 5,025,106
_RS20320
Position (kb) 5020
5021
5022
5023 Strain fitness (log2 ratio) -1
0
1
2
3 at 5019.712 kb on + strand, within CA265_RS20310 at 5019.806 kb on + strand at 5019.828 kb on + strand at 5019.863 kb on - strand at 5019.866 kb on + strand at 5019.900 kb on - strand at 5019.953 kb on + strand at 5020.002 kb on - strand at 5020.002 kb on - strand at 5020.006 kb on - strand at 5020.047 kb on - strand at 5020.052 kb on - strand at 5020.066 kb on + strand at 5020.066 kb on + strand at 5020.075 kb on - strand at 5020.142 kb on + strand at 5020.163 kb on + strand at 5020.211 kb on + strand at 5020.212 kb on - strand at 5020.212 kb on - strand at 5020.216 kb on + strand at 5020.246 kb on + strand at 5020.251 kb on - strand at 5020.283 kb on + strand at 5020.283 kb on + strand at 5020.283 kb on + strand at 5020.342 kb on + strand at 5020.343 kb on - strand at 5020.394 kb on - strand at 5020.408 kb on + strand at 5020.409 kb on - strand at 5020.430 kb on + strand at 5020.637 kb on + strand at 5020.672 kb on + strand at 5020.733 kb on + strand at 5020.733 kb on + strand at 5020.795 kb on + strand at 5020.795 kb on + strand at 5020.796 kb on - strand at 5020.796 kb on - strand at 5020.870 kb on - strand, within CA265_RS20315 at 5020.921 kb on + strand, within CA265_RS20315 at 5020.929 kb on + strand, within CA265_RS20315 at 5020.929 kb on + strand, within CA265_RS20315 at 5020.941 kb on - strand, within CA265_RS20315 at 5020.941 kb on - strand, within CA265_RS20315 at 5020.943 kb on + strand, within CA265_RS20315 at 5020.978 kb on - strand, within CA265_RS20315 at 5021.008 kb on + strand, within CA265_RS20315 at 5021.008 kb on + strand, within CA265_RS20315 at 5021.009 kb on - strand, within CA265_RS20315 at 5021.031 kb on - strand, within CA265_RS20315 at 5021.092 kb on + strand, within CA265_RS20315 at 5021.093 kb on - strand, within CA265_RS20315 at 5021.096 kb on + strand, within CA265_RS20315 at 5021.126 kb on + strand, within CA265_RS20315 at 5021.127 kb on - strand, within CA265_RS20315 at 5021.127 kb on - strand, within CA265_RS20315 at 5021.225 kb on + strand, within CA265_RS20315 at 5021.225 kb on + strand, within CA265_RS20315 at 5021.225 kb on + strand, within CA265_RS20315 at 5021.226 kb on - strand, within CA265_RS20315 at 5021.228 kb on - strand, within CA265_RS20315 at 5021.281 kb on + strand, within CA265_RS20315 at 5021.281 kb on + strand, within CA265_RS20315 at 5021.282 kb on - strand, within CA265_RS20315 at 5021.342 kb on + strand, within CA265_RS20315 at 5021.384 kb on + strand, within CA265_RS20315 at 5021.385 kb on - strand, within CA265_RS20315 at 5021.457 kb on + strand, within CA265_RS20315 at 5021.457 kb on + strand, within CA265_RS20315 at 5021.457 kb on + strand, within CA265_RS20315 at 5021.458 kb on - strand, within CA265_RS20315 at 5021.458 kb on - strand, within CA265_RS20315 at 5021.458 kb on - strand, within CA265_RS20315 at 5021.492 kb on - strand, within CA265_RS20315 at 5021.495 kb on + strand, within CA265_RS20315 at 5021.495 kb on + strand, within CA265_RS20315 at 5021.496 kb on - strand, within CA265_RS20315 at 5021.517 kb on + strand, within CA265_RS20315 at 5021.518 kb on - strand, within CA265_RS20315 at 5021.552 kb on + strand, within CA265_RS20315 at 5021.611 kb on + strand, within CA265_RS20315 at 5021.631 kb on + strand, within CA265_RS20315 at 5021.633 kb on + strand, within CA265_RS20315 at 5021.633 kb on + strand, within CA265_RS20315 at 5021.634 kb on - strand, within CA265_RS20315 at 5021.637 kb on + strand, within CA265_RS20315 at 5021.638 kb on - strand, within CA265_RS20315 at 5021.671 kb on + strand, within CA265_RS20315 at 5021.675 kb on + strand, within CA265_RS20315 at 5021.675 kb on + strand, within CA265_RS20315 at 5021.680 kb on - strand, within CA265_RS20315 at 5021.680 kb on - strand, within CA265_RS20315 at 5021.683 kb on - strand, within CA265_RS20315 at 5021.786 kb on + strand, within CA265_RS20315 at 5021.831 kb on - strand, within CA265_RS20315 at 5021.860 kb on + strand, within CA265_RS20315 at 5021.861 kb on - strand, within CA265_RS20315 at 5021.879 kb on + strand, within CA265_RS20315 at 5021.903 kb on + strand, within CA265_RS20315 at 5021.942 kb on + strand, within CA265_RS20315 at 5021.967 kb on - strand, within CA265_RS20315 at 5021.974 kb on + strand, within CA265_RS20315 at 5021.974 kb on + strand, within CA265_RS20315 at 5021.982 kb on - strand, within CA265_RS20315 at 5021.982 kb on - strand, within CA265_RS20315 at 5022.001 kb on + strand, within CA265_RS20315 at 5022.001 kb on + strand, within CA265_RS20315 at 5022.001 kb on + strand, within CA265_RS20315 at 5022.002 kb on - strand, within CA265_RS20315 at 5022.002 kb on - strand, within CA265_RS20315 at 5022.002 kb on - strand, within CA265_RS20315 at 5022.013 kb on - strand at 5022.042 kb on - strand at 5022.129 kb on - strand at 5022.133 kb on - strand at 5022.133 kb on - strand at 5022.133 kb on - strand at 5022.133 kb on - strand at 5022.135 kb on - strand at 5022.135 kb on - strand at 5022.148 kb on - strand at 5022.219 kb on + strand at 5022.224 kb on - strand at 5022.267 kb on + strand at 5022.282 kb on - strand at 5022.289 kb on + strand at 5022.316 kb on + strand at 5022.317 kb on - strand at 5022.387 kb on - strand at 5022.408 kb on + strand at 5022.408 kb on + strand at 5022.438 kb on + strand at 5022.438 kb on + strand at 5022.439 kb on - strand at 5022.439 kb on - strand at 5022.442 kb on + strand at 5022.484 kb on + strand, within CA265_RS20320 at 5022.485 kb on - strand, within CA265_RS20320 at 5022.511 kb on - strand, within CA265_RS20320 at 5022.554 kb on - strand, within CA265_RS20320 at 5022.554 kb on - strand, within CA265_RS20320 at 5022.565 kb on + strand, within CA265_RS20320 at 5022.568 kb on - strand, within CA265_RS20320 at 5022.568 kb on - strand, within CA265_RS20320 at 5022.572 kb on - strand, within CA265_RS20320 at 5022.599 kb on + strand, within CA265_RS20320 at 5022.599 kb on + strand, within CA265_RS20320 at 5022.615 kb on + strand, within CA265_RS20320 at 5022.643 kb on + strand, within CA265_RS20320 at 5022.644 kb on - strand, within CA265_RS20320 at 5022.644 kb on - strand, within CA265_RS20320 at 5022.644 kb on - strand, within CA265_RS20320 at 5022.644 kb on - strand, within CA265_RS20320 at 5022.645 kb on + strand, within CA265_RS20320 at 5022.646 kb on - strand, within CA265_RS20320 at 5022.654 kb on + strand, within CA265_RS20320 at 5022.654 kb on + strand, within CA265_RS20320 at 5022.654 kb on + strand, within CA265_RS20320 at 5022.674 kb on + strand, within CA265_RS20320 at 5022.675 kb on - strand, within CA265_RS20320 at 5022.675 kb on - strand, within CA265_RS20320 at 5022.677 kb on + strand, within CA265_RS20320 at 5022.678 kb on - strand, within CA265_RS20320 at 5022.678 kb on - strand, within CA265_RS20320 at 5022.729 kb on + strand, within CA265_RS20320 at 5022.730 kb on - strand, within CA265_RS20320 at 5022.730 kb on - strand, within CA265_RS20320 at 5022.774 kb on + strand at 5022.789 kb on + strand, within CA265_RS20320 at 5022.789 kb on + strand, within CA265_RS20320 at 5022.790 kb on - strand, within CA265_RS20320 at 5022.790 kb on - strand, within CA265_RS20320 at 5022.790 kb on - strand, within CA265_RS20320 at 5022.795 kb on + strand, within CA265_RS20320 at 5022.795 kb on + strand, within CA265_RS20320 at 5022.796 kb on - strand, within CA265_RS20320 at 5022.820 kb on + strand, within CA265_RS20320 at 5022.821 kb on - strand, within CA265_RS20320 at 5022.879 kb on + strand, within CA265_RS20320 at 5022.893 kb on - strand, within CA265_RS20320 at 5022.907 kb on + strand, within CA265_RS20320 at 5022.938 kb on + strand, within CA265_RS20320 at 5022.939 kb on - strand, within CA265_RS20320 at 5022.958 kb on + strand, within CA265_RS20320 at 5022.959 kb on - strand, within CA265_RS20320 at 5023.033 kb on + strand, within CA265_RS20320 at 5023.033 kb on + strand, within CA265_RS20320 at 5023.034 kb on - strand, within CA265_RS20320 at 5023.034 kb on - strand, within CA265_RS20320 at 5023.038 kb on + strand, within CA265_RS20320 at 5023.038 kb on + strand, within CA265_RS20320 at 5023.038 kb on + strand, within CA265_RS20320 at 5023.039 kb on - strand, within CA265_RS20320 at 5023.043 kb on + strand, within CA265_RS20320 at 5023.136 kb on + strand, within CA265_RS20320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,019,712 + CA265_RS20310 0.90 +0.5 5,019,806 + -0.6 5,019,828 + -1.5 5,019,863 - -0.1 5,019,866 + +0.5 5,019,900 - +0.5 5,019,953 + +0.0 5,020,002 - +0.0 5,020,002 - +0.8 5,020,006 - +0.4 5,020,047 - -0.2 5,020,052 - +1.0 5,020,066 + -0.8 5,020,066 + +0.4 5,020,075 - -0.9 5,020,142 + +1.3 5,020,163 + +0.3 5,020,211 + +0.8 5,020,212 - -0.3 5,020,212 - -0.5 5,020,216 + -0.7 5,020,246 + +0.1 5,020,251 - +0.6 5,020,283 + -0.3 5,020,283 + +0.7 5,020,283 + +1.3 5,020,342 + -0.4 5,020,343 - -0.3 5,020,394 - +1.2 5,020,408 + +1.5 5,020,409 - -0.5 5,020,430 + -0.9 5,020,637 + +0.3 5,020,672 + +3.1 5,020,733 + +0.7 5,020,733 + +0.8 5,020,795 + -0.1 5,020,795 + +1.5 5,020,796 - +1.4 5,020,796 - +0.7 5,020,870 - CA265_RS20315 0.13 +0.3 5,020,921 + CA265_RS20315 0.17 -0.0 5,020,929 + CA265_RS20315 0.17 -0.7 5,020,929 + CA265_RS20315 0.17 +0.5 5,020,941 - CA265_RS20315 0.18 +0.0 5,020,941 - CA265_RS20315 0.18 -0.2 5,020,943 + CA265_RS20315 0.18 +1.7 5,020,978 - CA265_RS20315 0.21 +0.7 5,021,008 + CA265_RS20315 0.23 +0.2 5,021,008 + CA265_RS20315 0.23 +0.7 5,021,009 - CA265_RS20315 0.23 -0.3 5,021,031 - CA265_RS20315 0.24 -0.1 5,021,092 + CA265_RS20315 0.28 +0.0 5,021,093 - CA265_RS20315 0.28 +0.5 5,021,096 + CA265_RS20315 0.29 +1.1 5,021,126 + CA265_RS20315 0.31 -0.1 5,021,127 - CA265_RS20315 0.31 +0.4 5,021,127 - CA265_RS20315 0.31 +0.2 5,021,225 + CA265_RS20315 0.37 +0.0 5,021,225 + CA265_RS20315 0.37 +0.6 5,021,225 + CA265_RS20315 0.37 -0.1 5,021,226 - CA265_RS20315 0.37 +0.5 5,021,228 - CA265_RS20315 0.38 +0.0 5,021,281 + CA265_RS20315 0.41 +0.4 5,021,281 + CA265_RS20315 0.41 +1.5 5,021,282 - CA265_RS20315 0.41 +1.2 5,021,342 + CA265_RS20315 0.45 +0.1 5,021,384 + CA265_RS20315 0.48 +1.5 5,021,385 - CA265_RS20315 0.48 +1.5 5,021,457 + CA265_RS20315 0.53 -0.0 5,021,457 + CA265_RS20315 0.53 +1.0 5,021,457 + CA265_RS20315 0.53 +1.0 5,021,458 - CA265_RS20315 0.53 +0.3 5,021,458 - CA265_RS20315 0.53 +0.6 5,021,458 - CA265_RS20315 0.53 +0.8 5,021,492 - CA265_RS20315 0.55 +1.1 5,021,495 + CA265_RS20315 0.55 +0.7 5,021,495 + CA265_RS20315 0.55 +0.4 5,021,496 - CA265_RS20315 0.56 +0.9 5,021,517 + CA265_RS20315 0.57 +0.7 5,021,518 - CA265_RS20315 0.57 +0.4 5,021,552 + CA265_RS20315 0.59 +1.0 5,021,611 + CA265_RS20315 0.63 +1.1 5,021,631 + CA265_RS20315 0.65 +0.3 5,021,633 + CA265_RS20315 0.65 -0.8 5,021,633 + CA265_RS20315 0.65 +0.5 5,021,634 - CA265_RS20315 0.65 +1.5 5,021,637 + CA265_RS20315 0.65 +0.9 5,021,638 - CA265_RS20315 0.65 +0.7 5,021,671 + CA265_RS20315 0.67 +0.4 5,021,675 + CA265_RS20315 0.68 +0.1 5,021,675 + CA265_RS20315 0.68 +0.3 5,021,680 - CA265_RS20315 0.68 +0.3 5,021,680 - CA265_RS20315 0.68 +0.4 5,021,683 - CA265_RS20315 0.68 +0.4 5,021,786 + CA265_RS20315 0.75 +1.7 5,021,831 - CA265_RS20315 0.78 +0.7 5,021,860 + CA265_RS20315 0.80 +0.9 5,021,861 - CA265_RS20315 0.80 +1.4 5,021,879 + CA265_RS20315 0.81 -1.1 5,021,903 + CA265_RS20315 0.83 -0.3 5,021,942 + CA265_RS20315 0.86 +1.2 5,021,967 - CA265_RS20315 0.87 +1.3 5,021,974 + CA265_RS20315 0.88 +2.1 5,021,974 + CA265_RS20315 0.88 -0.6 5,021,982 - CA265_RS20315 0.88 +0.5 5,021,982 - CA265_RS20315 0.88 +0.1 5,022,001 + CA265_RS20315 0.90 +1.0 5,022,001 + CA265_RS20315 0.90 +1.4 5,022,001 + CA265_RS20315 0.90 +0.1 5,022,002 - CA265_RS20315 0.90 +0.5 5,022,002 - CA265_RS20315 0.90 +0.4 5,022,002 - CA265_RS20315 0.90 +0.1 5,022,013 - +1.2 5,022,042 - +0.4 5,022,129 - -0.2 5,022,133 - +0.9 5,022,133 - +0.2 5,022,133 - -0.1 5,022,133 - +0.7 5,022,135 - -0.1 5,022,135 - +0.4 5,022,148 - +0.8 5,022,219 + +1.4 5,022,224 - +0.9 5,022,267 + +0.9 5,022,282 - +0.2 5,022,289 + +0.9 5,022,316 + +0.8 5,022,317 - +1.3 5,022,387 - -0.3 5,022,408 + +0.4 5,022,408 + +1.0 5,022,438 + -0.8 5,022,438 + +0.7 5,022,439 - +1.3 5,022,439 - +0.4 5,022,442 + +0.9 5,022,484 + CA265_RS20320 0.11 +0.2 5,022,485 - CA265_RS20320 0.11 +1.4 5,022,511 - CA265_RS20320 0.12 +0.1 5,022,554 - CA265_RS20320 0.13 +0.0 5,022,554 - CA265_RS20320 0.13 +0.8 5,022,565 + CA265_RS20320 0.13 +3.3 5,022,568 - CA265_RS20320 0.13 +0.9 5,022,568 - CA265_RS20320 0.13 +0.6 5,022,572 - CA265_RS20320 0.14 +0.4 5,022,599 + CA265_RS20320 0.15 +1.2 5,022,599 + CA265_RS20320 0.15 +0.7 5,022,615 + CA265_RS20320 0.15 -0.1 5,022,643 + CA265_RS20320 0.16 +1.7 5,022,644 - CA265_RS20320 0.16 +0.4 5,022,644 - CA265_RS20320 0.16 +0.4 5,022,644 - CA265_RS20320 0.16 +0.6 5,022,644 - CA265_RS20320 0.16 +1.6 5,022,645 + CA265_RS20320 0.16 +0.3 5,022,646 - CA265_RS20320 0.16 -0.1 5,022,654 + CA265_RS20320 0.16 +0.9 5,022,654 + CA265_RS20320 0.16 +0.3 5,022,654 + CA265_RS20320 0.16 +0.9 5,022,674 + CA265_RS20320 0.17 +0.4 5,022,675 - CA265_RS20320 0.17 -0.2 5,022,675 - CA265_RS20320 0.17 +0.1 5,022,677 + CA265_RS20320 0.17 +0.8 5,022,678 - CA265_RS20320 0.17 +0.8 5,022,678 - CA265_RS20320 0.17 +0.2 5,022,729 + CA265_RS20320 0.19 +0.8 5,022,730 - CA265_RS20320 0.19 +0.5 5,022,730 - CA265_RS20320 0.19 +0.5 5,022,774 + +2.1 5,022,789 + CA265_RS20320 0.21 +0.9 5,022,789 + CA265_RS20320 0.21 -0.0 5,022,790 - CA265_RS20320 0.21 -0.1 5,022,790 - CA265_RS20320 0.21 +0.5 5,022,790 - CA265_RS20320 0.21 +0.3 5,022,795 + CA265_RS20320 0.21 +0.0 5,022,795 + CA265_RS20320 0.21 -0.0 5,022,796 - CA265_RS20320 0.21 +0.4 5,022,820 + CA265_RS20320 0.22 -0.2 5,022,821 - CA265_RS20320 0.22 -0.6 5,022,879 + CA265_RS20320 0.24 +1.1 5,022,893 - CA265_RS20320 0.25 +0.3 5,022,907 + CA265_RS20320 0.25 -0.9 5,022,938 + CA265_RS20320 0.26 +0.5 5,022,939 - CA265_RS20320 0.26 +0.2 5,022,958 + CA265_RS20320 0.27 -0.1 5,022,959 - CA265_RS20320 0.27 +1.6 5,023,033 + CA265_RS20320 0.29 +0.3 5,023,033 + CA265_RS20320 0.29 -0.7 5,023,034 - CA265_RS20320 0.29 +0.4 5,023,034 - CA265_RS20320 0.29 -0.1 5,023,038 + CA265_RS20320 0.29 -0.3 5,023,038 + CA265_RS20320 0.29 +0.1 5,023,038 + CA265_RS20320 0.29 -0.1 5,023,039 - CA265_RS20320 0.30 +0.7 5,023,043 + CA265_RS20320 0.30 +2.1 5,023,136 + CA265_RS20320 0.33 +0.7
Or see this region's nucleotide sequence