Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20065 and CA265_RS20070 are separated by 608 nucleotides CA265_RS20070 and CA265_RS20075 are separated by 435 nucleotides CA265_RS20075 and CA265_RS20080 are separated by 210 nucleotides
CA265_RS20065: CA265_RS20065 - hypothetical protein, at 4,962,901 to 4,963,080
_RS20065
CA265_RS20070: CA265_RS20070 - NadR, at 4,963,689 to 4,964,219
_RS20070
CA265_RS20075: CA265_RS20075 - hypothetical protein, at 4,964,655 to 4,964,972
_RS20075
CA265_RS20080: CA265_RS20080 - carbamoyl phosphate synthase large subunit, at 4,965,183 to 4,968,020
_RS20080
Position (kb) 4963
4964
4965 Strain fitness (log2 ratio) -2
-1
0
1 at 4962.765 kb on + strand at 4962.791 kb on + strand at 4962.792 kb on - strand at 4962.792 kb on - strand at 4962.823 kb on + strand at 4962.823 kb on + strand at 4962.878 kb on - strand at 4962.881 kb on + strand at 4962.882 kb on - strand at 4962.923 kb on + strand, within CA265_RS20065 at 4963.098 kb on - strand at 4963.116 kb on + strand at 4963.130 kb on + strand at 4963.130 kb on + strand at 4963.130 kb on + strand at 4963.170 kb on + strand at 4963.201 kb on - strand at 4963.274 kb on + strand at 4963.329 kb on + strand at 4963.330 kb on - strand at 4963.380 kb on - strand at 4963.392 kb on - strand at 4963.524 kb on + strand at 4963.525 kb on - strand at 4963.525 kb on - strand at 4963.592 kb on + strand at 4963.593 kb on - strand at 4963.593 kb on - strand at 4963.632 kb on - strand at 4963.685 kb on - strand at 4963.686 kb on + strand at 4963.687 kb on - strand at 4963.690 kb on + strand at 4963.690 kb on + strand at 4963.690 kb on + strand at 4963.759 kb on - strand, within CA265_RS20070 at 4963.765 kb on + strand, within CA265_RS20070 at 4963.813 kb on + strand, within CA265_RS20070 at 4963.876 kb on - strand, within CA265_RS20070 at 4963.883 kb on - strand, within CA265_RS20070 at 4963.968 kb on - strand, within CA265_RS20070 at 4964.044 kb on + strand, within CA265_RS20070 at 4964.047 kb on + strand, within CA265_RS20070 at 4964.052 kb on - strand, within CA265_RS20070 at 4964.052 kb on - strand, within CA265_RS20070 at 4964.162 kb on + strand, within CA265_RS20070 at 4964.222 kb on + strand at 4964.222 kb on + strand at 4964.223 kb on - strand at 4964.247 kb on + strand at 4964.296 kb on - strand at 4964.303 kb on + strand at 4964.320 kb on + strand at 4964.351 kb on + strand at 4964.370 kb on + strand at 4964.387 kb on + strand at 4964.392 kb on - strand at 4964.511 kb on - strand at 4964.688 kb on - strand, within CA265_RS20075 at 4964.717 kb on + strand, within CA265_RS20075 at 4964.718 kb on - strand, within CA265_RS20075 at 4964.789 kb on - strand, within CA265_RS20075 at 4964.865 kb on - strand, within CA265_RS20075 at 4964.875 kb on + strand, within CA265_RS20075 at 4964.876 kb on - strand, within CA265_RS20075 at 4964.963 kb on - strand at 4965.103 kb on + strand at 4965.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,962,765 + +0.2 4,962,791 + -1.6 4,962,792 - -1.1 4,962,792 - -0.2 4,962,823 + +1.0 4,962,823 + -0.1 4,962,878 - -0.5 4,962,881 + +0.5 4,962,882 - -0.1 4,962,923 + CA265_RS20065 0.12 +0.7 4,963,098 - -0.9 4,963,116 + +0.8 4,963,130 + -1.4 4,963,130 + +0.8 4,963,130 + -0.1 4,963,170 + +0.3 4,963,201 - +0.1 4,963,274 + -1.1 4,963,329 + +0.3 4,963,330 - +0.0 4,963,380 - +1.4 4,963,392 - +0.5 4,963,524 + -0.5 4,963,525 - +1.0 4,963,525 - +0.5 4,963,592 + -0.2 4,963,593 - +0.1 4,963,593 - -0.4 4,963,632 - +0.2 4,963,685 - -0.3 4,963,686 + -0.1 4,963,687 - -1.1 4,963,690 + +0.5 4,963,690 + +0.7 4,963,690 + +1.0 4,963,759 - CA265_RS20070 0.13 +0.5 4,963,765 + CA265_RS20070 0.14 -0.5 4,963,813 + CA265_RS20070 0.23 +0.8 4,963,876 - CA265_RS20070 0.35 +0.3 4,963,883 - CA265_RS20070 0.37 +1.4 4,963,968 - CA265_RS20070 0.53 -0.2 4,964,044 + CA265_RS20070 0.67 -0.4 4,964,047 + CA265_RS20070 0.67 +1.1 4,964,052 - CA265_RS20070 0.68 +0.8 4,964,052 - CA265_RS20070 0.68 +0.9 4,964,162 + CA265_RS20070 0.89 +0.4 4,964,222 + +0.2 4,964,222 + -2.7 4,964,223 - -0.6 4,964,247 + +0.5 4,964,296 - +0.4 4,964,303 + -1.3 4,964,320 + -0.6 4,964,351 + -0.3 4,964,370 + +0.3 4,964,387 + +0.9 4,964,392 - -1.1 4,964,511 - +0.4 4,964,688 - CA265_RS20075 0.10 -0.2 4,964,717 + CA265_RS20075 0.19 -0.4 4,964,718 - CA265_RS20075 0.20 -0.6 4,964,789 - CA265_RS20075 0.42 -0.7 4,964,865 - CA265_RS20075 0.66 -0.3 4,964,875 + CA265_RS20075 0.69 +0.5 4,964,876 - CA265_RS20075 0.69 -0.4 4,964,963 - +0.7 4,965,103 + +0.9 4,965,136 + +0.2
Or see this region's nucleotide sequence