Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19445 and CA265_RS19450 are separated by 52 nucleotides CA265_RS19450 and CA265_RS19455 are separated by 134 nucleotides CA265_RS19455 and CA265_RS19460 are separated by 92 nucleotides CA265_RS19460 and CA265_RS19465 are separated by 88 nucleotides
CA265_RS19445: CA265_RS19445 - hypothetical protein, at 4,826,500 to 4,827,165
_RS19445
CA265_RS19450: CA265_RS19450 - hypothetical protein, at 4,827,218 to 4,827,730
_RS19450
CA265_RS19455: CA265_RS19455 - hypothetical protein, at 4,827,865 to 4,829,133
_RS19455
CA265_RS19460: CA265_RS19460 - uracil phosphoribosyltransferase, at 4,829,226 to 4,829,870
_RS19460
CA265_RS19465: CA265_RS19465 - protein tyrosine phosphatase, at 4,829,959 to 4,830,276
_RS19465
Position (kb) 4827
4828
4829
4830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4826.874 kb on + strand, within CA265_RS19445 at 4826.874 kb on + strand, within CA265_RS19445 at 4826.875 kb on - strand, within CA265_RS19445 at 4826.875 kb on - strand, within CA265_RS19445 at 4827.003 kb on - strand, within CA265_RS19445 at 4827.046 kb on - strand, within CA265_RS19445 at 4827.052 kb on - strand, within CA265_RS19445 at 4827.122 kb on + strand at 4827.146 kb on + strand at 4827.151 kb on - strand at 4827.164 kb on - strand at 4827.164 kb on - strand at 4827.218 kb on - strand at 4827.223 kb on - strand at 4827.235 kb on - strand at 4827.306 kb on + strand, within CA265_RS19450 at 4827.307 kb on - strand, within CA265_RS19450 at 4827.307 kb on - strand, within CA265_RS19450 at 4827.354 kb on + strand, within CA265_RS19450 at 4827.361 kb on + strand, within CA265_RS19450 at 4827.402 kb on + strand, within CA265_RS19450 at 4827.403 kb on - strand, within CA265_RS19450 at 4827.405 kb on - strand, within CA265_RS19450 at 4827.487 kb on - strand, within CA265_RS19450 at 4827.524 kb on + strand, within CA265_RS19450 at 4827.525 kb on - strand, within CA265_RS19450 at 4827.560 kb on - strand, within CA265_RS19450 at 4827.611 kb on - strand, within CA265_RS19450 at 4827.617 kb on - strand, within CA265_RS19450 at 4827.622 kb on - strand, within CA265_RS19450 at 4827.629 kb on - strand, within CA265_RS19450 at 4827.654 kb on + strand, within CA265_RS19450 at 4827.655 kb on - strand, within CA265_RS19450 at 4827.658 kb on + strand, within CA265_RS19450 at 4827.659 kb on - strand, within CA265_RS19450 at 4827.663 kb on + strand, within CA265_RS19450 at 4827.680 kb on - strand at 4827.746 kb on + strand at 4827.747 kb on - strand at 4827.803 kb on - strand at 4827.803 kb on - strand at 4827.854 kb on + strand at 4827.859 kb on + strand at 4827.872 kb on + strand at 4827.891 kb on - strand at 4827.905 kb on + strand at 4827.911 kb on - strand at 4827.937 kb on - strand at 4827.969 kb on + strand at 4828.009 kb on + strand, within CA265_RS19455 at 4828.087 kb on - strand, within CA265_RS19455 at 4828.115 kb on - strand, within CA265_RS19455 at 4828.185 kb on - strand, within CA265_RS19455 at 4828.249 kb on + strand, within CA265_RS19455 at 4828.250 kb on - strand, within CA265_RS19455 at 4828.341 kb on + strand, within CA265_RS19455 at 4828.379 kb on + strand, within CA265_RS19455 at 4828.379 kb on + strand, within CA265_RS19455 at 4828.380 kb on - strand, within CA265_RS19455 at 4828.391 kb on + strand, within CA265_RS19455 at 4828.392 kb on - strand, within CA265_RS19455 at 4828.416 kb on - strand, within CA265_RS19455 at 4828.419 kb on - strand, within CA265_RS19455 at 4828.469 kb on - strand, within CA265_RS19455 at 4828.502 kb on + strand, within CA265_RS19455 at 4828.503 kb on - strand, within CA265_RS19455 at 4828.503 kb on - strand, within CA265_RS19455 at 4828.503 kb on - strand, within CA265_RS19455 at 4828.595 kb on + strand, within CA265_RS19455 at 4828.595 kb on + strand, within CA265_RS19455 at 4828.606 kb on + strand, within CA265_RS19455 at 4828.607 kb on - strand, within CA265_RS19455 at 4828.616 kb on + strand, within CA265_RS19455 at 4828.617 kb on - strand, within CA265_RS19455 at 4828.638 kb on + strand, within CA265_RS19455 at 4828.661 kb on + strand, within CA265_RS19455 at 4828.818 kb on + strand at 4828.875 kb on + strand, within CA265_RS19455 at 4828.875 kb on + strand, within CA265_RS19455 at 4828.876 kb on - strand, within CA265_RS19455 at 4828.876 kb on - strand, within CA265_RS19455 at 4828.885 kb on - strand, within CA265_RS19455 at 4828.892 kb on - strand, within CA265_RS19455 at 4828.929 kb on + strand, within CA265_RS19455 at 4828.953 kb on + strand, within CA265_RS19455 at 4828.954 kb on - strand, within CA265_RS19455 at 4828.954 kb on - strand, within CA265_RS19455 at 4829.005 kb on - strand, within CA265_RS19455 at 4829.137 kb on + strand at 4829.147 kb on + strand at 4829.156 kb on + strand at 4829.203 kb on + strand at 4829.203 kb on + strand at 4829.204 kb on - strand at 4829.204 kb on - strand at 4829.222 kb on + strand at 4829.222 kb on + strand at 4829.240 kb on - strand at 4829.240 kb on - strand at 4829.240 kb on - strand at 4829.255 kb on + strand at 4829.271 kb on - strand at 4829.407 kb on + strand, within CA265_RS19460 at 4829.407 kb on + strand, within CA265_RS19460 at 4829.413 kb on + strand, within CA265_RS19460 at 4829.414 kb on - strand, within CA265_RS19460 at 4829.458 kb on + strand, within CA265_RS19460 at 4829.580 kb on + strand, within CA265_RS19460 at 4829.606 kb on + strand, within CA265_RS19460 at 4829.607 kb on - strand, within CA265_RS19460 at 4829.607 kb on - strand, within CA265_RS19460 at 4829.607 kb on - strand, within CA265_RS19460 at 4829.611 kb on + strand, within CA265_RS19460 at 4829.614 kb on + strand, within CA265_RS19460 at 4829.687 kb on + strand, within CA265_RS19460 at 4829.807 kb on + strand at 4829.814 kb on + strand at 4829.815 kb on - strand at 4829.876 kb on - strand at 4829.936 kb on - strand at 4829.945 kb on + strand at 4829.976 kb on - strand at 4830.021 kb on + strand, within CA265_RS19465 at 4830.022 kb on - strand, within CA265_RS19465
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,826,874 + CA265_RS19445 0.56 +0.6 4,826,874 + CA265_RS19445 0.56 -1.5 4,826,875 - CA265_RS19445 0.56 +0.1 4,826,875 - CA265_RS19445 0.56 -0.8 4,827,003 - CA265_RS19445 0.76 +0.1 4,827,046 - CA265_RS19445 0.82 +0.7 4,827,052 - CA265_RS19445 0.83 -0.1 4,827,122 + -0.2 4,827,146 + +0.1 4,827,151 - +0.6 4,827,164 - +0.5 4,827,164 - +0.0 4,827,218 - +0.3 4,827,223 - +0.8 4,827,235 - -0.2 4,827,306 + CA265_RS19450 0.17 +0.6 4,827,307 - CA265_RS19450 0.17 -0.4 4,827,307 - CA265_RS19450 0.17 +0.1 4,827,354 + CA265_RS19450 0.27 +0.6 4,827,361 + CA265_RS19450 0.28 +0.1 4,827,402 + CA265_RS19450 0.36 -0.3 4,827,403 - CA265_RS19450 0.36 +1.1 4,827,405 - CA265_RS19450 0.36 +0.3 4,827,487 - CA265_RS19450 0.52 -0.1 4,827,524 + CA265_RS19450 0.60 +0.1 4,827,525 - CA265_RS19450 0.60 +1.1 4,827,560 - CA265_RS19450 0.67 +0.1 4,827,611 - CA265_RS19450 0.77 +0.4 4,827,617 - CA265_RS19450 0.78 +0.8 4,827,622 - CA265_RS19450 0.79 -0.1 4,827,629 - CA265_RS19450 0.80 -0.5 4,827,654 + CA265_RS19450 0.85 +0.0 4,827,655 - CA265_RS19450 0.85 +0.6 4,827,658 + CA265_RS19450 0.86 +0.3 4,827,659 - CA265_RS19450 0.86 +0.7 4,827,663 + CA265_RS19450 0.87 -0.4 4,827,680 - -0.7 4,827,746 + +0.1 4,827,747 - +0.9 4,827,803 - +0.8 4,827,803 - +0.6 4,827,854 + +0.2 4,827,859 + +1.2 4,827,872 + +1.2 4,827,891 - +0.3 4,827,905 + -0.5 4,827,911 - +0.3 4,827,937 - -0.0 4,827,969 + -0.2 4,828,009 + CA265_RS19455 0.11 +0.2 4,828,087 - CA265_RS19455 0.17 +0.4 4,828,115 - CA265_RS19455 0.20 +0.0 4,828,185 - CA265_RS19455 0.25 +0.1 4,828,249 + CA265_RS19455 0.30 +0.5 4,828,250 - CA265_RS19455 0.30 -0.9 4,828,341 + CA265_RS19455 0.38 -0.1 4,828,379 + CA265_RS19455 0.41 -1.0 4,828,379 + CA265_RS19455 0.41 +1.1 4,828,380 - CA265_RS19455 0.41 +0.6 4,828,391 + CA265_RS19455 0.41 +0.3 4,828,392 - CA265_RS19455 0.42 +0.5 4,828,416 - CA265_RS19455 0.43 +0.3 4,828,419 - CA265_RS19455 0.44 +0.5 4,828,469 - CA265_RS19455 0.48 +1.0 4,828,502 + CA265_RS19455 0.50 -0.5 4,828,503 - CA265_RS19455 0.50 -0.3 4,828,503 - CA265_RS19455 0.50 +0.3 4,828,503 - CA265_RS19455 0.50 +0.1 4,828,595 + CA265_RS19455 0.58 -1.3 4,828,595 + CA265_RS19455 0.58 -1.8 4,828,606 + CA265_RS19455 0.58 +0.9 4,828,607 - CA265_RS19455 0.58 +0.7 4,828,616 + CA265_RS19455 0.59 +0.5 4,828,617 - CA265_RS19455 0.59 +0.6 4,828,638 + CA265_RS19455 0.61 +0.8 4,828,661 + CA265_RS19455 0.63 +1.0 4,828,818 + +2.1 4,828,875 + CA265_RS19455 0.80 +1.0 4,828,875 + CA265_RS19455 0.80 -0.6 4,828,876 - CA265_RS19455 0.80 +0.1 4,828,876 - CA265_RS19455 0.80 +1.3 4,828,885 - CA265_RS19455 0.80 -0.7 4,828,892 - CA265_RS19455 0.81 +0.9 4,828,929 + CA265_RS19455 0.84 -0.3 4,828,953 + CA265_RS19455 0.86 -0.9 4,828,954 - CA265_RS19455 0.86 -0.1 4,828,954 - CA265_RS19455 0.86 +0.1 4,829,005 - CA265_RS19455 0.90 +0.2 4,829,137 + +0.1 4,829,147 + -0.2 4,829,156 + -0.7 4,829,203 + +0.3 4,829,203 + -0.6 4,829,204 - -0.9 4,829,204 - +0.0 4,829,222 + +0.2 4,829,222 + -0.3 4,829,240 - +0.3 4,829,240 - +0.5 4,829,240 - -0.1 4,829,255 + -0.4 4,829,271 - -1.4 4,829,407 + CA265_RS19460 0.28 -0.6 4,829,407 + CA265_RS19460 0.28 +0.7 4,829,413 + CA265_RS19460 0.29 +0.3 4,829,414 - CA265_RS19460 0.29 -0.1 4,829,458 + CA265_RS19460 0.36 -2.1 4,829,580 + CA265_RS19460 0.55 -0.2 4,829,606 + CA265_RS19460 0.59 +0.6 4,829,607 - CA265_RS19460 0.59 +0.4 4,829,607 - CA265_RS19460 0.59 -0.1 4,829,607 - CA265_RS19460 0.59 -0.3 4,829,611 + CA265_RS19460 0.60 -0.3 4,829,614 + CA265_RS19460 0.60 -1.3 4,829,687 + CA265_RS19460 0.71 -0.8 4,829,807 + +0.1 4,829,814 + +1.1 4,829,815 - +0.6 4,829,876 - +0.3 4,829,936 - +0.0 4,829,945 + +0.8 4,829,976 - -0.1 4,830,021 + CA265_RS19465 0.19 -1.1 4,830,022 - CA265_RS19465 0.20 -0.1
Or see this region's nucleotide sequence