Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19395 and CA265_RS19400 are separated by 129 nucleotides CA265_RS19400 and CA265_RS19405 are separated by 60 nucleotides CA265_RS19405 and CA265_RS19410 are separated by 0 nucleotides
CA265_RS19395: CA265_RS19395 - hypothetical protein, at 4,813,953 to 4,816,448
_RS19395
CA265_RS19400: CA265_RS19400 - hypothetical protein, at 4,816,578 to 4,817,663
_RS19400
CA265_RS19405: CA265_RS19405 - transcriptional regulator, at 4,817,724 to 4,818,233
_RS19405
CA265_RS19410: CA265_RS19410 - hypothetical protein, at 4,818,234 to 4,818,683
_RS19410
Position (kb) 4816
4817
4818 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4816.460 kb on + strand at 4816.516 kb on + strand at 4816.574 kb on + strand at 4816.574 kb on + strand at 4816.613 kb on - strand at 4816.739 kb on - strand, within CA265_RS19400 at 4816.772 kb on + strand, within CA265_RS19400 at 4816.773 kb on - strand, within CA265_RS19400 at 4816.868 kb on - strand, within CA265_RS19400 at 4816.896 kb on + strand, within CA265_RS19400 at 4816.897 kb on - strand, within CA265_RS19400 at 4816.970 kb on + strand, within CA265_RS19400 at 4817.111 kb on + strand, within CA265_RS19400 at 4817.167 kb on - strand, within CA265_RS19400 at 4817.192 kb on + strand, within CA265_RS19400 at 4817.193 kb on - strand, within CA265_RS19400 at 4817.229 kb on - strand, within CA265_RS19400 at 4817.236 kb on + strand, within CA265_RS19400 at 4817.237 kb on - strand, within CA265_RS19400 at 4817.286 kb on + strand, within CA265_RS19400 at 4817.295 kb on + strand, within CA265_RS19400 at 4817.361 kb on - strand, within CA265_RS19400 at 4817.365 kb on - strand, within CA265_RS19400 at 4817.365 kb on - strand, within CA265_RS19400 at 4817.418 kb on + strand, within CA265_RS19400 at 4817.419 kb on - strand, within CA265_RS19400 at 4817.449 kb on - strand, within CA265_RS19400 at 4817.453 kb on - strand, within CA265_RS19400 at 4817.453 kb on - strand, within CA265_RS19400 at 4817.456 kb on + strand, within CA265_RS19400 at 4817.457 kb on - strand, within CA265_RS19400 at 4817.466 kb on - strand, within CA265_RS19400 at 4817.492 kb on + strand, within CA265_RS19400 at 4817.525 kb on + strand, within CA265_RS19400 at 4817.557 kb on + strand at 4817.606 kb on + strand at 4817.606 kb on + strand at 4817.607 kb on - strand at 4817.645 kb on - strand at 4817.812 kb on + strand, within CA265_RS19405 at 4817.812 kb on + strand, within CA265_RS19405 at 4817.812 kb on + strand, within CA265_RS19405 at 4817.847 kb on - strand, within CA265_RS19405 at 4817.877 kb on - strand, within CA265_RS19405 at 4817.914 kb on + strand, within CA265_RS19405 at 4817.930 kb on - strand, within CA265_RS19405 at 4818.037 kb on + strand, within CA265_RS19405 at 4818.037 kb on + strand, within CA265_RS19405 at 4818.038 kb on - strand, within CA265_RS19405 at 4818.058 kb on + strand, within CA265_RS19405 at 4818.104 kb on + strand, within CA265_RS19405 at 4818.138 kb on - strand, within CA265_RS19405 at 4818.138 kb on - strand, within CA265_RS19405 at 4818.159 kb on - strand, within CA265_RS19405 at 4818.235 kb on + strand at 4818.239 kb on + strand at 4818.240 kb on - strand at 4818.314 kb on + strand, within CA265_RS19410 at 4818.315 kb on - strand, within CA265_RS19410 at 4818.368 kb on + strand, within CA265_RS19410 at 4818.443 kb on + strand, within CA265_RS19410 at 4818.577 kb on - strand, within CA265_RS19410 at 4818.581 kb on - strand, within CA265_RS19410 at 4818.606 kb on + strand, within CA265_RS19410
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,816,460 + -2.0 4,816,516 + -0.8 4,816,574 + -0.2 4,816,574 + -0.8 4,816,613 - +0.5 4,816,739 - CA265_RS19400 0.15 +0.5 4,816,772 + CA265_RS19400 0.18 +0.0 4,816,773 - CA265_RS19400 0.18 -0.1 4,816,868 - CA265_RS19400 0.27 -0.7 4,816,896 + CA265_RS19400 0.29 +0.2 4,816,897 - CA265_RS19400 0.29 +0.4 4,816,970 + CA265_RS19400 0.36 +1.1 4,817,111 + CA265_RS19400 0.49 +0.3 4,817,167 - CA265_RS19400 0.54 -0.2 4,817,192 + CA265_RS19400 0.57 +0.4 4,817,193 - CA265_RS19400 0.57 +0.2 4,817,229 - CA265_RS19400 0.60 +0.5 4,817,236 + CA265_RS19400 0.61 -0.3 4,817,237 - CA265_RS19400 0.61 +0.8 4,817,286 + CA265_RS19400 0.65 +0.6 4,817,295 + CA265_RS19400 0.66 +0.1 4,817,361 - CA265_RS19400 0.72 -0.3 4,817,365 - CA265_RS19400 0.72 +3.0 4,817,365 - CA265_RS19400 0.72 +0.1 4,817,418 + CA265_RS19400 0.77 +1.0 4,817,419 - CA265_RS19400 0.77 +0.4 4,817,449 - CA265_RS19400 0.80 +0.2 4,817,453 - CA265_RS19400 0.81 -0.9 4,817,453 - CA265_RS19400 0.81 -2.2 4,817,456 + CA265_RS19400 0.81 +0.5 4,817,457 - CA265_RS19400 0.81 +0.0 4,817,466 - CA265_RS19400 0.82 +2.0 4,817,492 + CA265_RS19400 0.84 +0.6 4,817,525 + CA265_RS19400 0.87 +0.5 4,817,557 + +0.6 4,817,606 + +0.6 4,817,606 + +0.1 4,817,607 - -0.5 4,817,645 - -0.9 4,817,812 + CA265_RS19405 0.17 -0.7 4,817,812 + CA265_RS19405 0.17 +0.1 4,817,812 + CA265_RS19405 0.17 +0.5 4,817,847 - CA265_RS19405 0.24 +0.0 4,817,877 - CA265_RS19405 0.30 +1.5 4,817,914 + CA265_RS19405 0.37 -0.1 4,817,930 - CA265_RS19405 0.40 +0.8 4,818,037 + CA265_RS19405 0.61 +0.3 4,818,037 + CA265_RS19405 0.61 +0.6 4,818,038 - CA265_RS19405 0.62 +0.5 4,818,058 + CA265_RS19405 0.65 +0.8 4,818,104 + CA265_RS19405 0.75 -0.1 4,818,138 - CA265_RS19405 0.81 +2.8 4,818,138 - CA265_RS19405 0.81 +0.5 4,818,159 - CA265_RS19405 0.85 -0.6 4,818,235 + -0.3 4,818,239 + +0.9 4,818,240 - +0.8 4,818,314 + CA265_RS19410 0.18 -0.1 4,818,315 - CA265_RS19410 0.18 -0.3 4,818,368 + CA265_RS19410 0.30 -0.7 4,818,443 + CA265_RS19410 0.46 +0.4 4,818,577 - CA265_RS19410 0.76 -0.8 4,818,581 - CA265_RS19410 0.77 +0.5 4,818,606 + CA265_RS19410 0.83 +0.6
Or see this region's nucleotide sequence