Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14825

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14820 and CA265_RS14825 are separated by 534 nucleotidesCA265_RS14825 and CA265_RS14830 are separated by 3 nucleotidesCA265_RS14830 and CA265_RS14835 are separated by 75 nucleotides CA265_RS14820: CA265_RS14820 - hypothetical protein, at 3,734,576 to 3,735,574 _RS14820 CA265_RS14825: CA265_RS14825 - outer membrane protein assembly factor BamD, at 3,736,109 to 3,737,044 _RS14825 CA265_RS14830: CA265_RS14830 - RNA polymerase Rpb6, at 3,737,048 to 3,737,374 _RS14830 CA265_RS14835: CA265_RS14835 - phosphopantothenoylcysteine decarboxylase, at 3,737,450 to 3,738,649 _RS14835 Position (kb) 3736 3737 3738Strain fitness (log2 ratio) -1 0 1 2at 3735.847 kb on + strandat 3735.848 kb on - strandat 3735.848 kb on - strandat 3735.848 kb on - strandat 3735.848 kb on - strandat 3735.851 kb on + strandat 3735.851 kb on + strandat 3735.852 kb on - strandat 3735.853 kb on + strandat 3735.895 kb on + strandat 3735.897 kb on + strandat 3735.898 kb on - strandat 3735.900 kb on + strandat 3735.904 kb on - strandat 3735.905 kb on + strandat 3735.906 kb on - strandat 3735.908 kb on + strandat 3735.909 kb on - strandat 3735.963 kb on - strandat 3735.971 kb on + strandat 3736.001 kb on + strandat 3736.003 kb on + strandat 3736.006 kb on - strandat 3736.090 kb on + strandat 3736.093 kb on + strandat 3736.941 kb on + strand, within CA265_RS14825at 3736.943 kb on + strand, within CA265_RS14825at 3736.995 kb on + strandat 3737.415 kb on + strandat 3737.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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3,735,847 + +0.0
3,735,848 - -1.0
3,735,848 - +1.0
3,735,848 - -0.2
3,735,848 - -0.6
3,735,851 + +0.6
3,735,851 + +0.3
3,735,852 - +0.2
3,735,853 + +0.4
3,735,895 + -0.6
3,735,897 + +0.4
3,735,898 - -0.1
3,735,900 + -0.5
3,735,904 - +0.1
3,735,905 + +0.2
3,735,906 - +0.8
3,735,908 + +0.1
3,735,909 - -0.2
3,735,963 - -0.1
3,735,971 + -0.6
3,736,001 + +0.4
3,736,003 + +1.9
3,736,006 - +0.4
3,736,090 + +0.1
3,736,093 + -0.9
3,736,941 + CA265_RS14825 0.89 +0.4
3,736,943 + CA265_RS14825 0.89 +1.0
3,736,995 + +0.4
3,737,415 + -0.3
3,737,422 + +0.6

Or see this region's nucleotide sequence