Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS14820 and CA265_RS14825 are separated by 534 nucleotides CA265_RS14825 and CA265_RS14830 are separated by 3 nucleotides CA265_RS14830 and CA265_RS14835 are separated by 75 nucleotides
CA265_RS14820: CA265_RS14820 - hypothetical protein, at 3,734,576 to 3,735,574
_RS14820
CA265_RS14825: CA265_RS14825 - outer membrane protein assembly factor BamD, at 3,736,109 to 3,737,044
_RS14825
CA265_RS14830: CA265_RS14830 - RNA polymerase Rpb6, at 3,737,048 to 3,737,374
_RS14830
CA265_RS14835: CA265_RS14835 - phosphopantothenoylcysteine decarboxylase, at 3,737,450 to 3,738,649
_RS14835
Position (kb)
3736
3737
3738 Strain fitness (log2 ratio)
-1
0
1
2 at 3735.847 kb on + strand at 3735.848 kb on - strand at 3735.848 kb on - strand at 3735.848 kb on - strand at 3735.848 kb on - strand at 3735.851 kb on + strand at 3735.851 kb on + strand at 3735.852 kb on - strand at 3735.853 kb on + strand at 3735.895 kb on + strand at 3735.897 kb on + strand at 3735.898 kb on - strand at 3735.900 kb on + strand at 3735.904 kb on - strand at 3735.905 kb on + strand at 3735.906 kb on - strand at 3735.908 kb on + strand at 3735.909 kb on - strand at 3735.963 kb on - strand at 3735.971 kb on + strand at 3736.001 kb on + strand at 3736.003 kb on + strand at 3736.006 kb on - strand at 3736.090 kb on + strand at 3736.093 kb on + strand at 3736.941 kb on + strand, within CA265_RS14825 at 3736.943 kb on + strand, within CA265_RS14825 at 3736.995 kb on + strand at 3737.415 kb on + strand at 3737.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 3,735,847 + +0.0 3,735,848 - -1.0 3,735,848 - +1.0 3,735,848 - -0.2 3,735,848 - -0.6 3,735,851 + +0.6 3,735,851 + +0.3 3,735,852 - +0.2 3,735,853 + +0.4 3,735,895 + -0.6 3,735,897 + +0.4 3,735,898 - -0.1 3,735,900 + -0.5 3,735,904 - +0.1 3,735,905 + +0.2 3,735,906 - +0.8 3,735,908 + +0.1 3,735,909 - -0.2 3,735,963 - -0.1 3,735,971 + -0.6 3,736,001 + +0.4 3,736,003 + +1.9 3,736,006 - +0.4 3,736,090 + +0.1 3,736,093 + -0.9 3,736,941 + CA265_RS14825 0.89 +0.4 3,736,943 + CA265_RS14825 0.89 +1.0 3,736,995 + +0.4 3,737,415 + -0.3 3,737,422 + +0.6
Or see this region's nucleotide sequence