Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06230

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06225 and CA265_RS06230 are separated by 126 nucleotidesCA265_RS06230 and CA265_RS06235 are separated by 141 nucleotidesCA265_RS06235 and CA265_RS06240 are separated by 130 nucleotidesCA265_RS06240 and CA265_RS06245 are separated by 136 nucleotides CA265_RS06225: CA265_RS06225 - adenylosuccinate lyase, at 1,534,809 to 1,536,155 _RS06225 CA265_RS06230: CA265_RS06230 - hypothetical protein, at 1,536,282 to 1,536,479 _RS06230 CA265_RS06235: CA265_RS06235 - hypothetical protein, at 1,536,621 to 1,536,842 _RS06235 CA265_RS06240: CA265_RS06240 - hypothetical protein, at 1,536,973 to 1,537,191 _RS06240 CA265_RS06245: CA265_RS06245 - hypothetical protein, at 1,537,328 to 1,537,546 _RS06245 Position (kb) 1536 1537Strain fitness (log2 ratio) -2 -1 0 1 2at 1536.203 kb on + strandat 1536.226 kb on - strandat 1536.296 kb on + strandat 1536.348 kb on + strand, within CA265_RS06230at 1536.372 kb on - strand, within CA265_RS06230at 1536.372 kb on - strand, within CA265_RS06230at 1536.662 kb on + strand, within CA265_RS06235at 1536.722 kb on + strand, within CA265_RS06235at 1536.858 kb on - strandat 1536.882 kb on + strandat 1536.959 kb on - strandat 1536.964 kb on + strandat 1536.970 kb on - strandat 1536.974 kb on + strandat 1536.975 kb on - strandat 1536.982 kb on - strandat 1537.010 kb on - strand, within CA265_RS06240at 1537.015 kb on - strand, within CA265_RS06240at 1537.015 kb on - strand, within CA265_RS06240at 1537.044 kb on + strand, within CA265_RS06240at 1537.062 kb on + strand, within CA265_RS06240at 1537.099 kb on - strand, within CA265_RS06240at 1537.129 kb on - strand, within CA265_RS06240at 1537.129 kb on - strand, within CA265_RS06240at 1537.318 kb on + strandat 1537.318 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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1,536,203 + -0.2
1,536,226 - -0.1
1,536,296 + -2.2
1,536,348 + CA265_RS06230 0.33 -0.7
1,536,372 - CA265_RS06230 0.45 -1.2
1,536,372 - CA265_RS06230 0.45 -0.4
1,536,662 + CA265_RS06235 0.18 -0.7
1,536,722 + CA265_RS06235 0.45 +2.3
1,536,858 - -1.4
1,536,882 + +0.9
1,536,959 - -0.5
1,536,964 + +0.6
1,536,970 - -0.0
1,536,974 + +0.5
1,536,975 - -1.5
1,536,982 - +0.7
1,537,010 - CA265_RS06240 0.17 +1.0
1,537,015 - CA265_RS06240 0.19 -0.0
1,537,015 - CA265_RS06240 0.19 -0.4
1,537,044 + CA265_RS06240 0.32 +0.1
1,537,062 + CA265_RS06240 0.41 -0.2
1,537,099 - CA265_RS06240 0.58 +0.5
1,537,129 - CA265_RS06240 0.71 -0.4
1,537,129 - CA265_RS06240 0.71 -0.6
1,537,318 + +0.0
1,537,318 + +0.7

Or see this region's nucleotide sequence