Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04035 and CA265_RS04040 are separated by 36 nucleotides CA265_RS04040 and CA265_RS04045 are separated by 134 nucleotides CA265_RS04045 and CA265_RS04050 are separated by 66 nucleotides
CA265_RS04035: CA265_RS04035 - hypothetical protein, at 967,991 to 969,499
_RS04035
CA265_RS04040: CA265_RS04040 - hypothetical protein, at 969,536 to 969,853
_RS04040
CA265_RS04045: CA265_RS04045 - hypothetical protein, at 969,988 to 970,380
_RS04045
CA265_RS04050: CA265_RS04050 - nucleoside-diphosphate sugar epimerase, at 970,447 to 971,322
_RS04050
Position (kb) 969
970 Strain fitness (log2 ratio) -2
-1
0
1
2 at 968.559 kb on - strand, within CA265_RS04035 at 968.561 kb on - strand, within CA265_RS04035 at 968.561 kb on - strand, within CA265_RS04035 at 968.608 kb on + strand, within CA265_RS04035 at 968.677 kb on - strand, within CA265_RS04035 at 968.784 kb on + strand, within CA265_RS04035 at 968.872 kb on + strand, within CA265_RS04035 at 968.872 kb on + strand, within CA265_RS04035 at 968.885 kb on + strand, within CA265_RS04035 at 968.886 kb on - strand, within CA265_RS04035 at 968.886 kb on - strand, within CA265_RS04035 at 968.970 kb on + strand, within CA265_RS04035 at 968.987 kb on - strand, within CA265_RS04035 at 969.097 kb on + strand, within CA265_RS04035 at 969.098 kb on - strand, within CA265_RS04035 at 969.299 kb on + strand, within CA265_RS04035 at 969.369 kb on - strand at 969.374 kb on - strand at 969.479 kb on - strand at 969.543 kb on + strand at 969.584 kb on - strand, within CA265_RS04040 at 969.595 kb on + strand, within CA265_RS04040 at 969.596 kb on - strand, within CA265_RS04040 at 969.596 kb on - strand, within CA265_RS04040 at 969.600 kb on - strand, within CA265_RS04040 at 969.892 kb on - strand at 969.927 kb on + strand at 969.928 kb on - strand at 969.944 kb on - strand at 969.970 kb on - strand at 969.970 kb on - strand at 970.005 kb on + strand at 970.023 kb on - strand at 970.105 kb on + strand, within CA265_RS04045 at 970.106 kb on - strand, within CA265_RS04045 at 970.183 kb on - strand, within CA265_RS04045 at 970.216 kb on + strand, within CA265_RS04045 at 970.230 kb on - strand, within CA265_RS04045 at 970.256 kb on + strand, within CA265_RS04045 at 970.274 kb on + strand, within CA265_RS04045 at 970.275 kb on - strand, within CA265_RS04045 at 970.304 kb on + strand, within CA265_RS04045 at 970.378 kb on + strand at 970.378 kb on + strand at 970.379 kb on - strand at 970.396 kb on + strand at 970.780 kb on + strand, within CA265_RS04050 at 970.781 kb on - strand, within CA265_RS04050 at 970.800 kb on + strand, within CA265_RS04050 at 970.801 kb on - strand, within CA265_RS04050 at 970.801 kb on - strand, within CA265_RS04050 at 970.811 kb on - strand, within CA265_RS04050 at 970.852 kb on - strand, within CA265_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 968,559 - CA265_RS04035 0.38 -0.5 968,561 - CA265_RS04035 0.38 -1.8 968,561 - CA265_RS04035 0.38 -0.0 968,608 + CA265_RS04035 0.41 -0.1 968,677 - CA265_RS04035 0.45 -1.4 968,784 + CA265_RS04035 0.53 -1.2 968,872 + CA265_RS04035 0.58 -0.6 968,872 + CA265_RS04035 0.58 +0.6 968,885 + CA265_RS04035 0.59 +0.3 968,886 - CA265_RS04035 0.59 +0.1 968,886 - CA265_RS04035 0.59 +0.2 968,970 + CA265_RS04035 0.65 +0.5 968,987 - CA265_RS04035 0.66 +0.8 969,097 + CA265_RS04035 0.73 +0.1 969,098 - CA265_RS04035 0.73 -0.0 969,299 + CA265_RS04035 0.87 +0.3 969,369 - +0.9 969,374 - +0.4 969,479 - -0.6 969,543 + -0.7 969,584 - CA265_RS04040 0.15 +0.7 969,595 + CA265_RS04040 0.19 +0.2 969,596 - CA265_RS04040 0.19 -0.8 969,596 - CA265_RS04040 0.19 +0.6 969,600 - CA265_RS04040 0.20 +0.3 969,892 - -0.2 969,927 + -0.3 969,928 - -0.1 969,944 - +0.3 969,970 - +0.5 969,970 - +0.3 970,005 + +0.8 970,023 - -0.3 970,105 + CA265_RS04045 0.30 +0.3 970,106 - CA265_RS04045 0.30 -0.4 970,183 - CA265_RS04045 0.50 +0.1 970,216 + CA265_RS04045 0.58 +0.8 970,230 - CA265_RS04045 0.62 -0.3 970,256 + CA265_RS04045 0.68 -0.2 970,274 + CA265_RS04045 0.73 -0.9 970,275 - CA265_RS04045 0.73 +0.7 970,304 + CA265_RS04045 0.80 +0.4 970,378 + -1.0 970,378 + -0.0 970,379 - -1.3 970,396 + -1.2 970,780 + CA265_RS04050 0.38 -2.2 970,781 - CA265_RS04050 0.38 -0.2 970,800 + CA265_RS04050 0.40 -0.6 970,801 - CA265_RS04050 0.40 -1.0 970,801 - CA265_RS04050 0.40 +0.0 970,811 - CA265_RS04050 0.42 +1.0 970,852 - CA265_RS04050 0.46 +1.9
Or see this region's nucleotide sequence