Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03995 and CA265_RS04000 are separated by 197 nucleotides CA265_RS04000 and CA265_RS04005 are separated by 47 nucleotides
CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654
_RS03995
CA265_RS04000: CA265_RS04000 - hypothetical protein, at 956,852 to 957,172
_RS04000
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
Position (kb) 956
957
958 Strain fitness (log2 ratio) -1
0
1
2
3 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.892 kb on - strand, within CA265_RS03995 at 955.996 kb on + strand, within CA265_RS03995 at 956.014 kb on - strand, within CA265_RS03995 at 956.048 kb on - strand, within CA265_RS03995 at 956.064 kb on - strand, within CA265_RS03995 at 956.198 kb on - strand, within CA265_RS03995 at 956.206 kb on + strand, within CA265_RS03995 at 956.207 kb on - strand at 956.313 kb on - strand, within CA265_RS03995 at 956.313 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.346 kb on + strand, within CA265_RS03995 at 956.381 kb on - strand, within CA265_RS03995 at 956.517 kb on + strand at 956.518 kb on - strand at 956.522 kb on + strand at 956.586 kb on + strand at 956.599 kb on - strand at 956.632 kb on + strand at 956.673 kb on - strand at 956.730 kb on + strand at 956.764 kb on - strand at 956.790 kb on - strand at 956.802 kb on + strand at 956.813 kb on + strand at 956.947 kb on + strand, within CA265_RS04000 at 956.970 kb on + strand, within CA265_RS04000 at 957.053 kb on + strand, within CA265_RS04000 at 957.056 kb on + strand, within CA265_RS04000 at 957.078 kb on + strand, within CA265_RS04000 at 957.146 kb on - strand at 957.149 kb on + strand at 957.156 kb on - strand at 957.156 kb on - strand at 957.164 kb on - strand at 957.171 kb on - strand at 957.188 kb on + strand at 957.189 kb on - strand at 957.201 kb on - strand at 957.227 kb on - strand at 957.275 kb on + strand at 957.276 kb on - strand at 957.300 kb on - strand at 957.357 kb on - strand at 957.415 kb on + strand, within CA265_RS04005 at 957.417 kb on + strand, within CA265_RS04005 at 957.445 kb on - strand, within CA265_RS04005 at 957.516 kb on - strand, within CA265_RS04005 at 957.543 kb on - strand, within CA265_RS04005 at 957.546 kb on + strand, within CA265_RS04005 at 957.570 kb on - strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.585 kb on - strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.611 kb on - strand, within CA265_RS04005 at 957.625 kb on + strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.634 kb on - strand, within CA265_RS04005 at 957.736 kb on - strand, within CA265_RS04005 at 957.802 kb on - strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.881 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.982 kb on - strand, within CA265_RS04005 at 958.047 kb on + strand, within CA265_RS04005 at 958.048 kb on - strand, within CA265_RS04005 at 958.124 kb on + strand, within CA265_RS04005 at 958.152 kb on - strand, within CA265_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 955,864 - CA265_RS03995 0.52 -0.5 955,864 - CA265_RS03995 0.52 +0.5 955,864 - CA265_RS03995 0.52 -0.2 955,892 - CA265_RS03995 0.53 +0.0 955,996 + CA265_RS03995 0.60 -1.6 956,014 - CA265_RS03995 0.61 -0.3 956,048 - CA265_RS03995 0.63 +0.7 956,064 - CA265_RS03995 0.64 +0.2 956,198 - CA265_RS03995 0.72 -0.0 956,206 + CA265_RS03995 0.72 -0.2 956,207 - -1.6 956,313 - CA265_RS03995 0.79 +0.5 956,313 - CA265_RS03995 0.79 -0.9 956,336 - CA265_RS03995 0.80 -0.3 956,336 - CA265_RS03995 0.80 +0.0 956,340 - CA265_RS03995 0.81 -0.7 956,340 - CA265_RS03995 0.81 -0.2 956,346 + CA265_RS03995 0.81 -0.3 956,381 - CA265_RS03995 0.83 +0.4 956,517 + +0.4 956,518 - -1.0 956,522 + +0.8 956,586 + +0.3 956,599 - +0.5 956,632 + -0.8 956,673 - +2.6 956,730 + +0.3 956,764 - +0.3 956,790 - +0.7 956,802 + -0.9 956,813 + +0.8 956,947 + CA265_RS04000 0.30 +0.9 956,970 + CA265_RS04000 0.37 -1.4 957,053 + CA265_RS04000 0.63 +1.7 957,056 + CA265_RS04000 0.64 +0.4 957,078 + CA265_RS04000 0.70 +0.5 957,146 - -0.1 957,149 + +0.1 957,156 - +0.1 957,156 - +1.7 957,164 - +0.4 957,171 - +0.4 957,188 + -0.2 957,189 - -0.0 957,201 - -0.2 957,227 - -0.0 957,275 + +0.7 957,276 - +0.5 957,300 - +0.5 957,357 - -0.7 957,415 + CA265_RS04005 0.12 +0.4 957,417 + CA265_RS04005 0.13 +0.2 957,445 - CA265_RS04005 0.14 -0.2 957,516 - CA265_RS04005 0.19 +0.3 957,543 - CA265_RS04005 0.21 -0.1 957,546 + CA265_RS04005 0.21 -1.4 957,570 - CA265_RS04005 0.22 -0.7 957,584 + CA265_RS04005 0.23 +0.1 957,584 + CA265_RS04005 0.23 -0.0 957,584 + CA265_RS04005 0.23 +0.4 957,584 + CA265_RS04005 0.23 -0.2 957,584 + CA265_RS04005 0.23 -0.2 957,585 - CA265_RS04005 0.23 +0.6 957,589 + CA265_RS04005 0.24 -1.4 957,589 + CA265_RS04005 0.24 +0.6 957,611 - CA265_RS04005 0.25 +0.2 957,625 + CA265_RS04005 0.26 +1.1 957,626 - CA265_RS04005 0.26 +0.0 957,626 - CA265_RS04005 0.26 -0.4 957,634 - CA265_RS04005 0.27 -0.1 957,736 - CA265_RS04005 0.33 -0.8 957,802 - CA265_RS04005 0.37 +0.5 957,803 + CA265_RS04005 0.37 +0.1 957,803 + CA265_RS04005 0.37 -0.3 957,881 + CA265_RS04005 0.42 -0.6 957,900 + CA265_RS04005 0.44 +0.6 957,900 + CA265_RS04005 0.44 +2.1 957,982 - CA265_RS04005 0.49 +1.2 958,047 + CA265_RS04005 0.53 +0.1 958,048 - CA265_RS04005 0.53 +3.0 958,124 + CA265_RS04005 0.58 +0.4 958,152 - CA265_RS04005 0.60 +0.2
Or see this region's nucleotide sequence