Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03790 and CA265_RS03795 overlap by 4 nucleotides CA265_RS03795 and CA265_RS03800 are separated by 387 nucleotides CA265_RS03800 and CA265_RS03805 are separated by 159 nucleotides CA265_RS03805 and CA265_RS03810 are separated by 6 nucleotides
CA265_RS03790: CA265_RS03790 - hypothetical protein, at 897,272 to 897,769
_RS03790
CA265_RS03795: CA265_RS03795 - hypothetical protein, at 897,766 to 898,158
_RS03795
CA265_RS03800: CA265_RS03800 - TetR family transcriptional regulator, at 898,546 to 899,169
_RS03800
CA265_RS03805: CA265_RS03805 - hypothetical protein, at 899,329 to 899,586
_RS03805
CA265_RS03810: CA265_RS03810 - hypothetical protein, at 899,593 to 900,336
_RS03810
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1
2 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.710 kb on + strand, within CA265_RS03790 at 897.781 kb on - strand at 897.786 kb on + strand at 897.786 kb on + strand at 897.856 kb on + strand, within CA265_RS03795 at 897.865 kb on + strand, within CA265_RS03795 at 897.912 kb on + strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.944 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.959 kb on + strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.964 kb on - strand at 897.990 kb on + strand, within CA265_RS03795 at 898.034 kb on - strand, within CA265_RS03795 at 898.044 kb on - strand, within CA265_RS03795 at 898.047 kb on + strand, within CA265_RS03795 at 898.048 kb on - strand, within CA265_RS03795 at 898.096 kb on - strand, within CA265_RS03795 at 898.198 kb on + strand at 898.215 kb on + strand at 898.237 kb on + strand at 898.243 kb on - strand at 898.321 kb on + strand at 898.349 kb on + strand at 898.374 kb on - strand at 898.391 kb on + strand at 898.470 kb on - strand at 898.489 kb on + strand at 898.496 kb on - strand at 898.499 kb on + strand at 898.499 kb on + strand at 898.500 kb on - strand at 898.561 kb on - strand at 898.579 kb on - strand at 898.656 kb on - strand, within CA265_RS03800 at 898.668 kb on - strand, within CA265_RS03800 at 898.920 kb on + strand, within CA265_RS03800 at 898.921 kb on - strand, within CA265_RS03800 at 898.923 kb on + strand, within CA265_RS03800 at 898.924 kb on - strand, within CA265_RS03800 at 899.007 kb on - strand, within CA265_RS03800 at 899.011 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.170 kb on - strand at 899.170 kb on - strand at 899.245 kb on + strand at 899.246 kb on - strand at 899.248 kb on - strand at 899.282 kb on + strand at 899.372 kb on + strand, within CA265_RS03805 at 899.374 kb on + strand, within CA265_RS03805 at 899.447 kb on + strand, within CA265_RS03805 at 899.448 kb on - strand, within CA265_RS03805 at 899.452 kb on + strand, within CA265_RS03805 at 899.492 kb on + strand, within CA265_RS03805 at 899.499 kb on + strand, within CA265_RS03805 at 899.550 kb on + strand, within CA265_RS03805 at 899.609 kb on + strand at 899.610 kb on - strand at 899.638 kb on + strand at 899.668 kb on - strand, within CA265_RS03810 at 899.730 kb on - strand, within CA265_RS03810 at 899.796 kb on + strand, within CA265_RS03810 at 899.880 kb on + strand, within CA265_RS03810 at 899.881 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.950 kb on - strand, within CA265_RS03810 at 900.013 kb on - strand, within CA265_RS03810 at 900.037 kb on - strand, within CA265_RS03810 at 900.125 kb on - strand, within CA265_RS03810 at 900.147 kb on - strand, within CA265_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 897,604 + CA265_RS03790 0.67 -0.1 897,604 + CA265_RS03790 0.67 +1.0 897,604 + CA265_RS03790 0.67 -1.0 897,710 + CA265_RS03790 0.88 -0.9 897,781 - +1.0 897,786 + +0.1 897,786 + -0.6 897,856 + CA265_RS03795 0.23 +0.2 897,865 + CA265_RS03795 0.25 +0.5 897,912 + CA265_RS03795 0.37 +0.6 897,913 - CA265_RS03795 0.37 -1.6 897,913 - CA265_RS03795 0.37 -0.1 897,944 - CA265_RS03795 0.45 +0.6 897,958 - CA265_RS03795 0.49 -0.6 897,958 - CA265_RS03795 0.49 -0.5 897,959 + CA265_RS03795 0.49 -0.5 897,960 - CA265_RS03795 0.49 -0.9 897,960 - CA265_RS03795 0.49 +0.4 897,964 - +1.0 897,990 + CA265_RS03795 0.57 -0.2 898,034 - CA265_RS03795 0.68 +0.0 898,044 - CA265_RS03795 0.71 -1.6 898,047 + CA265_RS03795 0.72 +0.5 898,048 - CA265_RS03795 0.72 -0.4 898,096 - CA265_RS03795 0.84 -1.3 898,198 + -0.0 898,215 + -0.8 898,237 + -0.4 898,243 - +0.3 898,321 + -0.9 898,349 + +0.5 898,374 - -0.8 898,391 + +0.4 898,470 - -0.2 898,489 + +0.6 898,496 - -0.2 898,499 + +0.5 898,499 + -0.0 898,500 - -0.4 898,561 - -0.4 898,579 - -0.7 898,656 - CA265_RS03800 0.18 -0.3 898,668 - CA265_RS03800 0.20 -0.5 898,920 + CA265_RS03800 0.60 -0.3 898,921 - CA265_RS03800 0.60 +0.2 898,923 + CA265_RS03800 0.60 -0.8 898,924 - CA265_RS03800 0.61 -0.3 899,007 - CA265_RS03800 0.74 -0.3 899,011 - CA265_RS03800 0.75 -0.0 899,013 - CA265_RS03800 0.75 -0.7 899,013 - CA265_RS03800 0.75 -0.3 899,013 - CA265_RS03800 0.75 -0.8 899,170 - +0.2 899,170 - -0.7 899,245 + +0.1 899,246 - -0.5 899,248 - -0.0 899,282 + +0.6 899,372 + CA265_RS03805 0.17 -0.1 899,374 + CA265_RS03805 0.17 -0.0 899,447 + CA265_RS03805 0.46 +0.0 899,448 - CA265_RS03805 0.46 -0.7 899,452 + CA265_RS03805 0.48 +0.4 899,492 + CA265_RS03805 0.63 +1.6 899,499 + CA265_RS03805 0.66 +0.9 899,550 + CA265_RS03805 0.86 -0.8 899,609 + +0.3 899,610 - +0.0 899,638 + -0.6 899,668 - CA265_RS03810 0.10 -0.0 899,730 - CA265_RS03810 0.18 -0.8 899,796 + CA265_RS03810 0.27 -1.4 899,880 + CA265_RS03810 0.39 -0.5 899,881 - CA265_RS03810 0.39 +0.4 899,893 - CA265_RS03810 0.40 -0.1 899,893 - CA265_RS03810 0.40 +1.8 899,950 - CA265_RS03810 0.48 -0.6 900,013 - CA265_RS03810 0.56 -1.0 900,037 - CA265_RS03810 0.60 +0.4 900,125 - CA265_RS03810 0.72 +0.1 900,147 - CA265_RS03810 0.74 -1.4
Or see this region's nucleotide sequence