Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03620

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS03610 and CA265_RS03615 are separated by 101 nucleotidesCA265_RS03615 and CA265_RS03620 are separated by 1 nucleotidesCA265_RS03620 and CA265_RS03625 are separated by 66 nucleotides CA265_RS03610: CA265_RS03610 - imidazole glycerol phosphate synthase subunit HisF, at 863,308 to 864,447 _RS03610 CA265_RS03615: CA265_RS03615 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 864,549 to 865,298 _RS03615 CA265_RS03620: CA265_RS03620 - imidazole glycerol phosphate synthase subunit HisH, at 865,300 to 865,932 _RS03620 CA265_RS03625: CA265_RS03625 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 865,999 to 867,132 _RS03625 Position (kb) 865 866Strain fitness (log2 ratio) -2 -1 0 1at 864.300 kb on + strand, within CA265_RS03610at 864.313 kb on - strand, within CA265_RS03610at 864.352 kb on - strandat 864.490 kb on + strandat 864.584 kb on + strandat 864.631 kb on - strand, within CA265_RS03615at 864.633 kb on + strand, within CA265_RS03615at 864.633 kb on + strand, within CA265_RS03615at 864.708 kb on - strand, within CA265_RS03615at 864.782 kb on + strand, within CA265_RS03615at 864.788 kb on + strand, within CA265_RS03615at 864.789 kb on - strand, within CA265_RS03615at 864.792 kb on + strand, within CA265_RS03615at 864.879 kb on + strand, within CA265_RS03615at 864.915 kb on - strand, within CA265_RS03615at 864.992 kb on + strand, within CA265_RS03615at 865.044 kb on + strand, within CA265_RS03615at 865.121 kb on + strand, within CA265_RS03615at 865.143 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.184 kb on - strand, within CA265_RS03615at 865.216 kb on + strand, within CA265_RS03615at 865.281 kb on - strandat 865.290 kb on + strandat 865.291 kb on - strandat 865.291 kb on - strandat 865.291 kb on - strandat 865.295 kb on - strandat 865.302 kb on - strandat 865.302 kb on - strandat 865.454 kb on + strand, within CA265_RS03620at 865.461 kb on + strand, within CA265_RS03620at 865.481 kb on + strand, within CA265_RS03620at 865.482 kb on - strand, within CA265_RS03620at 865.491 kb on + strand, within CA265_RS03620at 865.494 kb on + strand, within CA265_RS03620at 865.494 kb on + strand, within CA265_RS03620at 865.513 kb on + strand, within CA265_RS03620at 865.612 kb on + strand, within CA265_RS03620at 865.807 kb on + strand, within CA265_RS03620at 865.817 kb on + strand, within CA265_RS03620at 865.837 kb on + strand, within CA265_RS03620at 865.838 kb on - strand, within CA265_RS03620at 865.942 kb on + strandat 865.944 kb on + strandat 865.954 kb on - strandat 866.001 kb on - strandat 866.134 kb on + strand, within CA265_RS03625at 866.157 kb on + strand, within CA265_RS03625at 866.178 kb on - strand, within CA265_RS03625at 866.320 kb on + strand, within CA265_RS03625at 866.333 kb on - strand, within CA265_RS03625at 866.378 kb on - strand, within CA265_RS03625at 866.398 kb on - strand, within CA265_RS03625at 866.401 kb on + strand, within CA265_RS03625at 866.401 kb on + strand, within CA265_RS03625at 866.402 kb on - strand, within CA265_RS03625at 866.420 kb on - strand, within CA265_RS03625at 866.536 kb on - strand, within CA265_RS03625at 866.601 kb on + strand, within CA265_RS03625at 866.655 kb on + strand, within CA265_RS03625at 866.780 kb on + strand, within CA265_RS03625at 866.902 kb on - strand, within CA265_RS03625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
864,300 + CA265_RS03610 0.87 +0.3
864,313 - CA265_RS03610 0.88 +0.0
864,352 - -0.6
864,490 + -0.2
864,584 + -0.9
864,631 - CA265_RS03615 0.11 -1.0
864,633 + CA265_RS03615 0.11 +0.3
864,633 + CA265_RS03615 0.11 +0.4
864,708 - CA265_RS03615 0.21 -0.3
864,782 + CA265_RS03615 0.31 -0.7
864,788 + CA265_RS03615 0.32 -0.3
864,789 - CA265_RS03615 0.32 -2.5
864,792 + CA265_RS03615 0.32 -0.2
864,879 + CA265_RS03615 0.44 +1.0
864,915 - CA265_RS03615 0.49 +0.7
864,992 + CA265_RS03615 0.59 +0.3
865,044 + CA265_RS03615 0.66 +0.0
865,121 + CA265_RS03615 0.76 -0.8
865,143 + CA265_RS03615 0.79 -0.6
865,154 + CA265_RS03615 0.81 +0.3
865,154 + CA265_RS03615 0.81 -0.9
865,154 + CA265_RS03615 0.81 -0.3
865,154 + CA265_RS03615 0.81 -0.5
865,184 - CA265_RS03615 0.85 -1.0
865,216 + CA265_RS03615 0.89 +0.1
865,281 - +0.6
865,290 + -0.0
865,291 - -0.4
865,291 - -0.3
865,291 - -0.3
865,295 - +0.1
865,302 - +0.3
865,302 - +0.8
865,454 + CA265_RS03620 0.24 +0.1
865,461 + CA265_RS03620 0.25 -0.4
865,481 + CA265_RS03620 0.29 +0.1
865,482 - CA265_RS03620 0.29 +1.1
865,491 + CA265_RS03620 0.30 +0.1
865,494 + CA265_RS03620 0.31 +0.4
865,494 + CA265_RS03620 0.31 +0.5
865,513 + CA265_RS03620 0.34 +0.2
865,612 + CA265_RS03620 0.49 +0.6
865,807 + CA265_RS03620 0.80 -0.1
865,817 + CA265_RS03620 0.82 +0.3
865,837 + CA265_RS03620 0.85 -0.1
865,838 - CA265_RS03620 0.85 +1.4
865,942 + +0.2
865,944 + -0.4
865,954 - -0.7
866,001 - -0.8
866,134 + CA265_RS03625 0.12 -0.1
866,157 + CA265_RS03625 0.14 -0.3
866,178 - CA265_RS03625 0.16 -0.0
866,320 + CA265_RS03625 0.28 +0.8
866,333 - CA265_RS03625 0.29 -0.2
866,378 - CA265_RS03625 0.33 -1.5
866,398 - CA265_RS03625 0.35 -0.6
866,401 + CA265_RS03625 0.35 +0.1
866,401 + CA265_RS03625 0.35 +0.7
866,402 - CA265_RS03625 0.36 +0.7
866,420 - CA265_RS03625 0.37 -0.4
866,536 - CA265_RS03625 0.47 +1.1
866,601 + CA265_RS03625 0.53 +0.1
866,655 + CA265_RS03625 0.58 -0.4
866,780 + CA265_RS03625 0.69 -0.4
866,902 - CA265_RS03625 0.80 -0.5

Or see this region's nucleotide sequence