Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03505 and CA265_RS03510 are separated by 40 nucleotides CA265_RS03510 and CA265_RS03515 are separated by 104 nucleotides CA265_RS03515 and CA265_RS03520 are separated by 71 nucleotides CA265_RS03520 and CA265_RS03525 are separated by 259 nucleotides
CA265_RS03505: CA265_RS03505 - oxidoreductase, at 846,040 to 846,804
_RS03505
CA265_RS03510: CA265_RS03510 - ferredoxin, at 846,845 to 847,177
_RS03510
CA265_RS03515: CA265_RS03515 - Fe-S assembly protein IscX, at 847,282 to 847,524
_RS03515
CA265_RS03520: CA265_RS03520 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 847,596 to 848,123
_RS03520
CA265_RS03525: CA265_RS03525 - hypothetical protein, at 848,383 to 849,213
_RS03525
Position (kb) 847
848 Strain fitness (log2 ratio) -2
-1
0
1 at 846.807 kb on + strand at 846.807 kb on + strand at 846.807 kb on + strand at 847.175 kb on + strand at 847.176 kb on - strand at 847.176 kb on - strand at 847.221 kb on + strand at 847.221 kb on + strand at 847.223 kb on + strand at 847.223 kb on + strand at 847.333 kb on - strand, within CA265_RS03515 at 847.347 kb on - strand, within CA265_RS03515 at 847.347 kb on - strand, within CA265_RS03515 at 847.348 kb on + strand, within CA265_RS03515 at 847.392 kb on + strand, within CA265_RS03515 at 847.502 kb on - strand at 847.642 kb on + strand at 847.643 kb on - strand at 847.683 kb on - strand, within CA265_RS03520 at 847.713 kb on - strand, within CA265_RS03520 at 847.769 kb on - strand, within CA265_RS03520 at 847.785 kb on - strand, within CA265_RS03520 at 847.785 kb on - strand, within CA265_RS03520 at 847.847 kb on + strand, within CA265_RS03520 at 847.847 kb on + strand, within CA265_RS03520 at 847.909 kb on - strand, within CA265_RS03520 at 847.923 kb on - strand, within CA265_RS03520 at 847.940 kb on - strand, within CA265_RS03520 at 847.940 kb on - strand, within CA265_RS03520 at 847.982 kb on - strand, within CA265_RS03520 at 848.003 kb on + strand, within CA265_RS03520 at 848.003 kb on + strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.020 kb on - strand, within CA265_RS03520 at 848.133 kb on + strand at 848.133 kb on + strand at 848.148 kb on + strand at 848.149 kb on - strand at 848.149 kb on - strand at 848.159 kb on + strand at 848.160 kb on - strand at 848.160 kb on - strand at 848.228 kb on - strand at 848.246 kb on + strand at 848.261 kb on + strand at 848.269 kb on + strand at 848.305 kb on + strand at 848.306 kb on - strand at 848.319 kb on - strand at 848.392 kb on + strand at 848.392 kb on + strand at 848.399 kb on + strand at 848.440 kb on + strand at 848.441 kb on - strand at 848.501 kb on - strand, within CA265_RS03525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 846,807 + +0.4 846,807 + -0.0 846,807 + +0.2 847,175 + +0.3 847,176 - -1.0 847,176 - -0.1 847,221 + -0.4 847,221 + -0.0 847,223 + -0.0 847,223 + +1.0 847,333 - CA265_RS03515 0.21 -0.7 847,347 - CA265_RS03515 0.27 +0.4 847,347 - CA265_RS03515 0.27 +0.4 847,348 + CA265_RS03515 0.27 -0.3 847,392 + CA265_RS03515 0.45 +0.8 847,502 - -0.7 847,642 + +0.1 847,643 - -0.5 847,683 - CA265_RS03520 0.16 -1.9 847,713 - CA265_RS03520 0.22 +0.7 847,769 - CA265_RS03520 0.33 -0.9 847,785 - CA265_RS03520 0.36 -0.1 847,785 - CA265_RS03520 0.36 -1.0 847,847 + CA265_RS03520 0.48 -0.0 847,847 + CA265_RS03520 0.48 +0.7 847,909 - CA265_RS03520 0.59 -0.1 847,923 - CA265_RS03520 0.62 +0.7 847,940 - CA265_RS03520 0.65 -0.1 847,940 - CA265_RS03520 0.65 +0.1 847,982 - CA265_RS03520 0.73 +1.2 848,003 + CA265_RS03520 0.77 +0.6 848,003 + CA265_RS03520 0.77 -2.6 848,004 - CA265_RS03520 0.77 -0.5 848,004 - CA265_RS03520 0.77 +0.0 848,004 - CA265_RS03520 0.77 -0.3 848,020 - CA265_RS03520 0.80 -0.3 848,133 + +0.2 848,133 + -1.4 848,148 + +0.3 848,149 - +0.4 848,149 - -0.7 848,159 + -0.6 848,160 - +0.2 848,160 - -0.3 848,228 - +0.4 848,246 + -0.6 848,261 + +0.0 848,269 + -1.0 848,305 + +0.5 848,306 - -0.1 848,319 - -0.4 848,392 + -1.0 848,392 + +0.3 848,399 + +0.4 848,440 + +0.3 848,441 - +0.2 848,501 - CA265_RS03525 0.14 -0.7
Or see this region's nucleotide sequence