Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03485 and CA265_RS03490 are separated by 56 nucleotides CA265_RS03490 and CA265_RS03495 are separated by 255 nucleotides CA265_RS03495 and CA265_RS03500 are separated by 5 nucleotides
CA265_RS03485: CA265_RS03485 - hypothetical protein, at 840,119 to 842,137
_RS03485
CA265_RS03490: CA265_RS03490 - hypothetical protein, at 842,194 to 842,874
_RS03490
CA265_RS03495: CA265_RS03495 - cytochrome c biogenesis protein, at 843,130 to 843,564
_RS03495
CA265_RS03500: CA265_RS03500 - cytochrome C biogenesis protein, at 843,570 to 846,035
_RS03500
Position (kb) 842
843 Strain fitness (log2 ratio) -1
0
1
2 at 841.195 kb on + strand, within CA265_RS03485 at 841.258 kb on + strand, within CA265_RS03485 at 841.293 kb on - strand, within CA265_RS03485 at 841.309 kb on - strand, within CA265_RS03485 at 841.578 kb on - strand, within CA265_RS03485 at 841.588 kb on + strand, within CA265_RS03485 at 841.588 kb on + strand, within CA265_RS03485 at 841.595 kb on - strand, within CA265_RS03485 at 841.595 kb on - strand, within CA265_RS03485 at 841.595 kb on - strand, within CA265_RS03485 at 841.599 kb on - strand, within CA265_RS03485 at 841.698 kb on + strand, within CA265_RS03485 at 841.705 kb on + strand, within CA265_RS03485 at 841.706 kb on - strand, within CA265_RS03485 at 841.723 kb on + strand, within CA265_RS03485 at 841.723 kb on + strand, within CA265_RS03485 at 841.847 kb on - strand, within CA265_RS03485 at 841.847 kb on - strand, within CA265_RS03485 at 841.848 kb on + strand, within CA265_RS03485 at 841.849 kb on - strand, within CA265_RS03485 at 841.849 kb on - strand, within CA265_RS03485 at 841.853 kb on - strand, within CA265_RS03485 at 841.853 kb on - strand, within CA265_RS03485 at 841.865 kb on + strand, within CA265_RS03485 at 841.878 kb on + strand, within CA265_RS03485 at 841.879 kb on - strand, within CA265_RS03485 at 841.881 kb on + strand, within CA265_RS03485 at 841.881 kb on + strand, within CA265_RS03485 at 841.881 kb on + strand, within CA265_RS03485 at 841.882 kb on - strand, within CA265_RS03485 at 841.902 kb on - strand, within CA265_RS03485 at 842.016 kb on - strand at 842.019 kb on - strand at 842.020 kb on + strand at 842.020 kb on + strand at 842.021 kb on - strand at 842.053 kb on + strand at 842.054 kb on - strand at 842.061 kb on - strand at 842.138 kb on + strand at 842.143 kb on - strand at 842.169 kb on - strand at 842.203 kb on + strand at 842.203 kb on + strand at 842.209 kb on + strand at 842.209 kb on + strand at 842.209 kb on + strand at 842.222 kb on - strand at 842.222 kb on - strand at 842.222 kb on - strand at 842.291 kb on - strand, within CA265_RS03490 at 842.351 kb on + strand, within CA265_RS03490 at 842.351 kb on + strand, within CA265_RS03490 at 842.364 kb on + strand, within CA265_RS03490 at 842.460 kb on + strand, within CA265_RS03490 at 842.462 kb on + strand, within CA265_RS03490 at 842.462 kb on + strand, within CA265_RS03490 at 842.463 kb on - strand, within CA265_RS03490 at 842.468 kb on + strand, within CA265_RS03490 at 842.481 kb on + strand, within CA265_RS03490 at 842.526 kb on + strand, within CA265_RS03490 at 842.547 kb on + strand, within CA265_RS03490 at 842.574 kb on - strand, within CA265_RS03490 at 842.599 kb on + strand, within CA265_RS03490 at 842.685 kb on - strand, within CA265_RS03490 at 842.692 kb on + strand, within CA265_RS03490 at 842.693 kb on - strand, within CA265_RS03490 at 842.746 kb on + strand, within CA265_RS03490 at 842.755 kb on + strand, within CA265_RS03490 at 842.755 kb on + strand, within CA265_RS03490 at 842.867 kb on - strand at 842.878 kb on - strand at 842.922 kb on - strand at 843.038 kb on - strand at 843.119 kb on + strand at 843.123 kb on + strand at 843.123 kb on + strand at 843.123 kb on + strand at 843.125 kb on + strand at 843.486 kb on + strand, within CA265_RS03495 at 843.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 841,195 + CA265_RS03485 0.53 +0.3 841,258 + CA265_RS03485 0.56 +0.9 841,293 - CA265_RS03485 0.58 +1.0 841,309 - CA265_RS03485 0.59 -1.3 841,578 - CA265_RS03485 0.72 +0.4 841,588 + CA265_RS03485 0.73 -0.4 841,588 + CA265_RS03485 0.73 +0.0 841,595 - CA265_RS03485 0.73 -0.3 841,595 - CA265_RS03485 0.73 -1.1 841,595 - CA265_RS03485 0.73 +1.4 841,599 - CA265_RS03485 0.73 +0.1 841,698 + CA265_RS03485 0.78 +0.4 841,705 + CA265_RS03485 0.79 -0.5 841,706 - CA265_RS03485 0.79 -0.1 841,723 + CA265_RS03485 0.79 +0.0 841,723 + CA265_RS03485 0.79 +0.1 841,847 - CA265_RS03485 0.86 -0.5 841,847 - CA265_RS03485 0.86 -0.2 841,848 + CA265_RS03485 0.86 +0.5 841,849 - CA265_RS03485 0.86 -0.7 841,849 - CA265_RS03485 0.86 -0.3 841,853 - CA265_RS03485 0.86 -0.8 841,853 - CA265_RS03485 0.86 -0.7 841,865 + CA265_RS03485 0.86 +0.3 841,878 + CA265_RS03485 0.87 +2.4 841,879 - CA265_RS03485 0.87 -0.8 841,881 + CA265_RS03485 0.87 -0.4 841,881 + CA265_RS03485 0.87 -0.1 841,881 + CA265_RS03485 0.87 -0.1 841,882 - CA265_RS03485 0.87 +0.4 841,902 - CA265_RS03485 0.88 +0.3 842,016 - +0.3 842,019 - -0.6 842,020 + +0.3 842,020 + +0.4 842,021 - +0.0 842,053 + +0.3 842,054 - +0.5 842,061 - +0.3 842,138 + +0.3 842,143 - +0.2 842,169 - -0.5 842,203 + -0.3 842,203 + +0.3 842,209 + -0.5 842,209 + +0.1 842,209 + -0.3 842,222 - -0.4 842,222 - +0.5 842,222 - +0.3 842,291 - CA265_RS03490 0.14 -0.3 842,351 + CA265_RS03490 0.23 +0.1 842,351 + CA265_RS03490 0.23 +0.7 842,364 + CA265_RS03490 0.25 +0.1 842,460 + CA265_RS03490 0.39 +0.2 842,462 + CA265_RS03490 0.39 +0.4 842,462 + CA265_RS03490 0.39 -0.2 842,463 - CA265_RS03490 0.40 +0.1 842,468 + CA265_RS03490 0.40 +1.2 842,481 + CA265_RS03490 0.42 -0.1 842,526 + CA265_RS03490 0.49 +0.2 842,547 + CA265_RS03490 0.52 +0.6 842,574 - CA265_RS03490 0.56 +0.9 842,599 + CA265_RS03490 0.59 -0.3 842,685 - CA265_RS03490 0.72 -0.4 842,692 + CA265_RS03490 0.73 +0.0 842,693 - CA265_RS03490 0.73 +0.4 842,746 + CA265_RS03490 0.81 +0.2 842,755 + CA265_RS03490 0.82 +0.7 842,755 + CA265_RS03490 0.82 +0.9 842,867 - -0.2 842,878 - +0.2 842,922 - -1.5 843,038 - -0.2 843,119 + +0.1 843,123 + -0.1 843,123 + -0.9 843,123 + +0.6 843,125 + -1.0 843,486 + CA265_RS03495 0.82 -0.1 843,524 + -0.2
Or see this region's nucleotide sequence