Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03255 and CA265_RS03260 are separated by 80 nucleotides CA265_RS03260 and CA265_RS03265 are separated by 3 nucleotides CA265_RS03265 and CA265_RS03270 are separated by 241 nucleotides CA265_RS03270 and CA265_RS03275 are separated by 114 nucleotides
CA265_RS03255: CA265_RS03255 - glycerophosphodiester phosphodiesterase, at 798,705 to 799,625
_RS03255
CA265_RS03260: CA265_RS03260 - multidrug ABC transporter ATP-binding protein, at 799,706 to 800,413
_RS03260
CA265_RS03265: CA265_RS03265 - hypothetical protein, at 800,417 to 800,959
_RS03265
CA265_RS03270: CA265_RS03270 - hypothetical protein, at 801,201 to 801,722
_RS03270
CA265_RS03275: CA265_RS03275 - hypothetical protein, at 801,837 to 802,022
_RS03275
Position (kb) 800
801 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 799.420 kb on - strand, within CA265_RS03255 at 799.440 kb on - strand, within CA265_RS03255 at 799.451 kb on - strand, within CA265_RS03255 at 799.506 kb on + strand, within CA265_RS03255 at 799.510 kb on - strand, within CA265_RS03255 at 799.536 kb on - strand at 799.587 kb on - strand at 799.591 kb on - strand at 799.593 kb on - strand at 799.614 kb on + strand at 799.616 kb on + strand at 799.619 kb on + strand at 799.619 kb on + strand at 799.619 kb on + strand at 799.676 kb on + strand at 799.677 kb on - strand at 799.684 kb on + strand at 799.685 kb on - strand at 799.732 kb on + strand at 799.825 kb on + strand, within CA265_RS03260 at 799.831 kb on + strand, within CA265_RS03260 at 799.843 kb on + strand, within CA265_RS03260 at 799.843 kb on + strand, within CA265_RS03260 at 799.861 kb on - strand, within CA265_RS03260 at 799.915 kb on + strand, within CA265_RS03260 at 799.915 kb on + strand, within CA265_RS03260 at 799.934 kb on - strand, within CA265_RS03260 at 799.964 kb on + strand, within CA265_RS03260 at 799.972 kb on + strand, within CA265_RS03260 at 799.972 kb on + strand, within CA265_RS03260 at 799.973 kb on - strand, within CA265_RS03260 at 799.973 kb on - strand, within CA265_RS03260 at 799.973 kb on - strand, within CA265_RS03260 at 799.976 kb on + strand, within CA265_RS03260 at 799.976 kb on + strand, within CA265_RS03260 at 799.977 kb on - strand, within CA265_RS03260 at 800.021 kb on - strand, within CA265_RS03260 at 800.021 kb on - strand, within CA265_RS03260 at 800.033 kb on - strand, within CA265_RS03260 at 800.235 kb on + strand, within CA265_RS03260 at 800.257 kb on + strand, within CA265_RS03260 at 800.257 kb on + strand, within CA265_RS03260 at 800.258 kb on - strand, within CA265_RS03260 at 800.303 kb on - strand, within CA265_RS03260 at 800.303 kb on - strand, within CA265_RS03260 at 800.421 kb on - strand at 800.473 kb on + strand, within CA265_RS03265 at 800.521 kb on - strand, within CA265_RS03265 at 800.578 kb on - strand, within CA265_RS03265 at 800.578 kb on - strand, within CA265_RS03265 at 800.596 kb on - strand, within CA265_RS03265 at 800.684 kb on + strand, within CA265_RS03265 at 800.685 kb on - strand, within CA265_RS03265 at 800.685 kb on - strand, within CA265_RS03265 at 800.685 kb on - strand, within CA265_RS03265 at 800.787 kb on + strand at 800.856 kb on + strand at 800.861 kb on + strand, within CA265_RS03265 at 800.861 kb on + strand, within CA265_RS03265 at 800.964 kb on + strand at 800.965 kb on - strand at 800.971 kb on - strand at 801.001 kb on - strand at 801.045 kb on + strand at 801.173 kb on - strand at 801.177 kb on - strand at 801.187 kb on - strand at 801.223 kb on + strand at 801.292 kb on + strand, within CA265_RS03270 at 801.293 kb on - strand, within CA265_RS03270 at 801.327 kb on - strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.417 kb on - strand, within CA265_RS03270 at 801.417 kb on - strand, within CA265_RS03270 at 801.461 kb on + strand, within CA265_RS03270 at 801.476 kb on - strand, within CA265_RS03270 at 801.482 kb on - strand, within CA265_RS03270 at 801.502 kb on - strand, within CA265_RS03270 at 801.535 kb on + strand, within CA265_RS03270 at 801.596 kb on - strand, within CA265_RS03270 at 801.620 kb on + strand, within CA265_RS03270 at 801.721 kb on - strand at 801.732 kb on - strand at 801.774 kb on + strand at 801.832 kb on - strand at 801.844 kb on - strand at 801.918 kb on + strand, within CA265_RS03275 at 801.918 kb on + strand, within CA265_RS03275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 799,420 - CA265_RS03255 0.78 +0.5 799,440 - CA265_RS03255 0.80 +0.5 799,451 - CA265_RS03255 0.81 +0.2 799,506 + CA265_RS03255 0.87 -0.1 799,510 - CA265_RS03255 0.87 -0.3 799,536 - -1.1 799,587 - +0.1 799,591 - +1.2 799,593 - +0.0 799,614 + +0.4 799,616 + -0.2 799,619 + +0.6 799,619 + +2.0 799,619 + +0.5 799,676 + +0.0 799,677 - -0.1 799,684 + -0.1 799,685 - +0.9 799,732 + +0.9 799,825 + CA265_RS03260 0.17 +0.1 799,831 + CA265_RS03260 0.18 -1.5 799,843 + CA265_RS03260 0.19 +0.4 799,843 + CA265_RS03260 0.19 -0.2 799,861 - CA265_RS03260 0.22 +0.1 799,915 + CA265_RS03260 0.30 -0.4 799,915 + CA265_RS03260 0.30 +2.0 799,934 - CA265_RS03260 0.32 +0.1 799,964 + CA265_RS03260 0.36 -0.1 799,972 + CA265_RS03260 0.38 -0.1 799,972 + CA265_RS03260 0.38 -0.5 799,973 - CA265_RS03260 0.38 +0.8 799,973 - CA265_RS03260 0.38 +0.6 799,973 - CA265_RS03260 0.38 -0.5 799,976 + CA265_RS03260 0.38 +0.6 799,976 + CA265_RS03260 0.38 +0.5 799,977 - CA265_RS03260 0.38 +0.5 800,021 - CA265_RS03260 0.44 -0.0 800,021 - CA265_RS03260 0.44 +0.4 800,033 - CA265_RS03260 0.46 -0.9 800,235 + CA265_RS03260 0.75 -0.4 800,257 + CA265_RS03260 0.78 -1.1 800,257 + CA265_RS03260 0.78 +0.9 800,258 - CA265_RS03260 0.78 -0.9 800,303 - CA265_RS03260 0.84 -0.7 800,303 - CA265_RS03260 0.84 -1.1 800,421 - -0.3 800,473 + CA265_RS03265 0.10 -0.1 800,521 - CA265_RS03265 0.19 +0.5 800,578 - CA265_RS03265 0.30 +0.6 800,578 - CA265_RS03265 0.30 +0.0 800,596 - CA265_RS03265 0.33 +1.1 800,684 + CA265_RS03265 0.49 -0.3 800,685 - CA265_RS03265 0.49 -0.4 800,685 - CA265_RS03265 0.49 -0.2 800,685 - CA265_RS03265 0.49 +1.0 800,787 + +3.5 800,856 + +2.7 800,861 + CA265_RS03265 0.82 +0.6 800,861 + CA265_RS03265 0.82 -0.1 800,964 + +0.2 800,965 - +0.2 800,971 - -0.4 801,001 - +0.2 801,045 + +0.5 801,173 - +0.2 801,177 - -0.5 801,187 - +0.1 801,223 + -2.0 801,292 + CA265_RS03270 0.17 +0.3 801,293 - CA265_RS03270 0.18 -0.0 801,327 - CA265_RS03270 0.24 +0.1 801,416 + CA265_RS03270 0.41 -0.5 801,416 + CA265_RS03270 0.41 -1.0 801,416 + CA265_RS03270 0.41 -0.0 801,417 - CA265_RS03270 0.41 +0.0 801,417 - CA265_RS03270 0.41 -1.0 801,461 + CA265_RS03270 0.50 -0.1 801,476 - CA265_RS03270 0.53 +0.7 801,482 - CA265_RS03270 0.54 -0.2 801,502 - CA265_RS03270 0.58 -0.5 801,535 + CA265_RS03270 0.64 -0.4 801,596 - CA265_RS03270 0.76 +0.7 801,620 + CA265_RS03270 0.80 -1.1 801,721 - -0.0 801,732 - +0.4 801,774 + -0.6 801,832 - +0.7 801,844 - -0.5 801,918 + CA265_RS03275 0.44 -0.2 801,918 + CA265_RS03275 0.44 +0.3
Or see this region's nucleotide sequence