Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03235 and CA265_RS03240 are separated by 12 nucleotides CA265_RS03240 and CA265_RS03245 overlap by 22 nucleotides CA265_RS03245 and CA265_RS03250 overlap by 4 nucleotides CA265_RS03250 and CA265_RS03255 are separated by 251 nucleotides
CA265_RS03235: CA265_RS03235 - hypothetical protein, at 795,759 to 796,400
_RS03235
CA265_RS03240: CA265_RS03240 - hypothetical protein, at 796,413 to 797,060
_RS03240
CA265_RS03245: CA265_RS03245 - two-component sensor histidine kinase, at 797,039 to 797,824
_RS03245
CA265_RS03250: CA265_RS03250 - DNA-binding response regulator, at 797,821 to 798,453
_RS03250
CA265_RS03255: CA265_RS03255 - glycerophosphodiester phosphodiesterase, at 798,705 to 799,625
_RS03255
Position (kb) 797
798 Strain fitness (log2 ratio) -1
0
1
2 at 796.086 kb on + strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.203 kb on - strand, within CA265_RS03235 at 796.262 kb on - strand, within CA265_RS03235 at 796.412 kb on + strand at 796.412 kb on + strand at 796.413 kb on - strand at 796.413 kb on - strand at 796.493 kb on - strand, within CA265_RS03240 at 796.609 kb on - strand, within CA265_RS03240 at 796.612 kb on - strand, within CA265_RS03240 at 796.613 kb on + strand, within CA265_RS03240 at 796.613 kb on + strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.659 kb on + strand, within CA265_RS03240 at 796.677 kb on - strand, within CA265_RS03240 at 796.713 kb on + strand, within CA265_RS03240 at 796.718 kb on - strand, within CA265_RS03240 at 796.727 kb on + strand, within CA265_RS03240 at 796.780 kb on - strand, within CA265_RS03240 at 796.825 kb on - strand, within CA265_RS03240 at 796.857 kb on - strand, within CA265_RS03240 at 796.881 kb on + strand, within CA265_RS03240 at 796.882 kb on - strand, within CA265_RS03240 at 796.956 kb on + strand, within CA265_RS03240 at 796.957 kb on - strand, within CA265_RS03240 at 796.958 kb on + strand, within CA265_RS03240 at 796.959 kb on - strand, within CA265_RS03240 at 796.959 kb on - strand, within CA265_RS03240 at 796.978 kb on - strand, within CA265_RS03240 at 797.008 kb on + strand at 797.009 kb on - strand at 797.016 kb on - strand at 797.017 kb on + strand at 797.020 kb on + strand at 797.037 kb on - strand at 797.058 kb on + strand at 797.118 kb on - strand, within CA265_RS03245 at 797.212 kb on - strand, within CA265_RS03245 at 797.357 kb on + strand, within CA265_RS03245 at 797.422 kb on + strand, within CA265_RS03245 at 797.423 kb on - strand, within CA265_RS03245 at 797.424 kb on + strand, within CA265_RS03245 at 797.452 kb on - strand, within CA265_RS03245 at 797.491 kb on + strand, within CA265_RS03245 at 797.497 kb on - strand, within CA265_RS03245 at 797.550 kb on + strand, within CA265_RS03245 at 797.550 kb on + strand, within CA265_RS03245 at 797.551 kb on - strand, within CA265_RS03245 at 797.608 kb on + strand, within CA265_RS03245 at 797.609 kb on - strand, within CA265_RS03245 at 797.625 kb on + strand, within CA265_RS03245 at 797.626 kb on - strand, within CA265_RS03245 at 797.688 kb on - strand, within CA265_RS03245 at 797.712 kb on + strand, within CA265_RS03245 at 797.713 kb on - strand, within CA265_RS03245 at 797.797 kb on + strand at 797.798 kb on - strand at 797.834 kb on + strand at 797.914 kb on + strand, within CA265_RS03250 at 797.914 kb on + strand, within CA265_RS03250 at 797.965 kb on - strand, within CA265_RS03250 at 797.965 kb on - strand, within CA265_RS03250 at 797.994 kb on + strand, within CA265_RS03250 at 797.995 kb on - strand, within CA265_RS03250 at 797.997 kb on + strand, within CA265_RS03250 at 797.998 kb on - strand, within CA265_RS03250 at 797.998 kb on - strand, within CA265_RS03250 at 798.027 kb on - strand, within CA265_RS03250 at 798.102 kb on + strand, within CA265_RS03250 at 798.103 kb on - strand, within CA265_RS03250 at 798.190 kb on - strand, within CA265_RS03250 at 798.320 kb on - strand, within CA265_RS03250 at 798.322 kb on - strand, within CA265_RS03250 at 798.451 kb on + strand at 798.458 kb on + strand at 798.458 kb on + strand at 798.495 kb on + strand at 798.510 kb on + strand at 798.511 kb on - strand at 798.522 kb on - strand at 798.540 kb on - strand at 798.548 kb on + strand at 798.548 kb on + strand at 798.552 kb on - strand at 798.555 kb on + strand at 798.555 kb on + strand at 798.556 kb on - strand at 798.556 kb on - strand at 798.560 kb on - strand at 798.627 kb on - strand at 798.735 kb on - strand at 798.735 kb on - strand at 798.784 kb on - strand at 798.784 kb on - strand at 798.784 kb on - strand at 798.785 kb on + strand at 798.798 kb on - strand, within CA265_RS03255 at 798.812 kb on - strand, within CA265_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 796,086 + CA265_RS03235 0.51 -0.5 796,167 - CA265_RS03235 0.64 +0.1 796,167 - CA265_RS03235 0.64 +0.8 796,167 - CA265_RS03235 0.64 +0.1 796,203 - CA265_RS03235 0.69 -0.5 796,262 - CA265_RS03235 0.78 +0.2 796,412 + +0.0 796,412 + +0.8 796,413 - -0.6 796,413 - +0.7 796,493 - CA265_RS03240 0.12 -0.1 796,609 - CA265_RS03240 0.30 +0.5 796,612 - CA265_RS03240 0.31 -0.9 796,613 + CA265_RS03240 0.31 +0.1 796,613 + CA265_RS03240 0.31 -0.1 796,614 - CA265_RS03240 0.31 +1.9 796,614 - CA265_RS03240 0.31 +0.6 796,614 - CA265_RS03240 0.31 -0.3 796,659 + CA265_RS03240 0.38 -0.5 796,677 - CA265_RS03240 0.41 +0.7 796,713 + CA265_RS03240 0.46 -0.2 796,718 - CA265_RS03240 0.47 +0.1 796,727 + CA265_RS03240 0.48 +0.9 796,780 - CA265_RS03240 0.57 -0.7 796,825 - CA265_RS03240 0.64 +1.0 796,857 - CA265_RS03240 0.69 +0.9 796,881 + CA265_RS03240 0.72 -0.1 796,882 - CA265_RS03240 0.72 +0.0 796,956 + CA265_RS03240 0.84 +0.6 796,957 - CA265_RS03240 0.84 -0.1 796,958 + CA265_RS03240 0.84 +0.5 796,959 - CA265_RS03240 0.84 -0.7 796,959 - CA265_RS03240 0.84 +0.1 796,978 - CA265_RS03240 0.87 -0.1 797,008 + -0.3 797,009 - -0.5 797,016 - -0.4 797,017 + -0.2 797,020 + -0.2 797,037 - -0.2 797,058 + +0.1 797,118 - CA265_RS03245 0.10 +0.4 797,212 - CA265_RS03245 0.22 +0.4 797,357 + CA265_RS03245 0.40 +0.0 797,422 + CA265_RS03245 0.49 -0.6 797,423 - CA265_RS03245 0.49 +0.3 797,424 + CA265_RS03245 0.49 +0.4 797,452 - CA265_RS03245 0.53 +0.8 797,491 + CA265_RS03245 0.58 +0.5 797,497 - CA265_RS03245 0.58 +0.4 797,550 + CA265_RS03245 0.65 +0.3 797,550 + CA265_RS03245 0.65 -1.0 797,551 - CA265_RS03245 0.65 +1.3 797,608 + CA265_RS03245 0.72 -0.1 797,609 - CA265_RS03245 0.73 -0.1 797,625 + CA265_RS03245 0.75 -0.1 797,626 - CA265_RS03245 0.75 +1.0 797,688 - CA265_RS03245 0.83 -0.1 797,712 + CA265_RS03245 0.86 +0.5 797,713 - CA265_RS03245 0.86 +0.1 797,797 + +1.3 797,798 - +0.0 797,834 + +0.3 797,914 + CA265_RS03250 0.15 -1.2 797,914 + CA265_RS03250 0.15 -0.1 797,965 - CA265_RS03250 0.23 -0.6 797,965 - CA265_RS03250 0.23 -0.9 797,994 + CA265_RS03250 0.27 +0.3 797,995 - CA265_RS03250 0.27 +0.0 797,997 + CA265_RS03250 0.28 -0.2 797,998 - CA265_RS03250 0.28 +0.5 797,998 - CA265_RS03250 0.28 +0.3 798,027 - CA265_RS03250 0.33 -0.4 798,102 + CA265_RS03250 0.44 -0.5 798,103 - CA265_RS03250 0.45 -0.1 798,190 - CA265_RS03250 0.58 +0.7 798,320 - CA265_RS03250 0.79 +0.2 798,322 - CA265_RS03250 0.79 -1.1 798,451 + +0.0 798,458 + +0.7 798,458 + +0.1 798,495 + +0.3 798,510 + +0.1 798,511 - -0.7 798,522 - +0.1 798,540 - +0.0 798,548 + -0.1 798,548 + -0.2 798,552 - -0.3 798,555 + +0.9 798,555 + +0.8 798,556 - +0.7 798,556 - -0.5 798,560 - +0.5 798,627 - -1.0 798,735 - +0.4 798,735 - -0.7 798,784 - -0.7 798,784 - +0.9 798,784 - +0.7 798,785 + +0.3 798,798 - CA265_RS03255 0.10 -0.2 798,812 - CA265_RS03255 0.12 +0.1
Or see this region's nucleotide sequence