Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03015

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03010 and CA265_RS03015 are separated by 50 nucleotidesCA265_RS03015 and CA265_RS03020 are separated by 83 nucleotides CA265_RS03010: CA265_RS03010 - hypothetical protein, at 748,254 to 750,179 _RS03010 CA265_RS03015: CA265_RS03015 - tRNA-specific adenosine deaminase, at 750,230 to 750,706 _RS03015 CA265_RS03020: CA265_RS03020 - outer membrane chaperone Skp, at 750,790 to 751,389 _RS03020 Position (kb) 750 751Strain fitness (log2 ratio) -2 -1 0 1 2at 749.317 kb on - strand, within CA265_RS03010at 749.319 kb on + strand, within CA265_RS03010at 749.327 kb on + strand, within CA265_RS03010at 749.366 kb on + strand, within CA265_RS03010at 749.367 kb on - strand, within CA265_RS03010at 749.367 kb on - strand, within CA265_RS03010at 749.370 kb on + strand, within CA265_RS03010at 749.370 kb on + strand, within CA265_RS03010at 749.371 kb on - strand, within CA265_RS03010at 749.378 kb on + strand, within CA265_RS03010at 749.379 kb on - strand, within CA265_RS03010at 749.382 kb on + strand, within CA265_RS03010at 749.382 kb on + strand, within CA265_RS03010at 749.447 kb on - strand, within CA265_RS03010at 749.454 kb on + strand, within CA265_RS03010at 749.476 kb on + strand, within CA265_RS03010at 749.477 kb on - strand, within CA265_RS03010at 749.492 kb on - strand, within CA265_RS03010at 749.497 kb on - strand, within CA265_RS03010at 749.552 kb on + strandat 749.553 kb on - strand, within CA265_RS03010at 749.561 kb on + strand, within CA265_RS03010at 749.586 kb on + strand, within CA265_RS03010at 749.601 kb on + strand, within CA265_RS03010at 749.604 kb on - strand, within CA265_RS03010at 749.607 kb on - strand, within CA265_RS03010at 749.637 kb on + strand, within CA265_RS03010at 749.638 kb on - strand, within CA265_RS03010at 749.732 kb on + strand, within CA265_RS03010at 749.758 kb on + strand, within CA265_RS03010at 749.821 kb on + strand, within CA265_RS03010at 749.822 kb on - strand, within CA265_RS03010at 749.868 kb on - strand, within CA265_RS03010at 749.943 kb on - strand, within CA265_RS03010at 749.976 kb on + strand, within CA265_RS03010at 750.019 kb on + strandat 750.019 kb on + strandat 750.020 kb on - strandat 750.074 kb on + strandat 750.074 kb on + strandat 750.075 kb on - strandat 750.075 kb on - strandat 750.075 kb on - strandat 750.177 kb on + strandat 750.178 kb on - strandat 750.178 kb on - strandat 750.234 kb on + strandat 750.239 kb on + strandat 750.263 kb on + strandat 750.269 kb on - strandat 750.269 kb on - strandat 750.352 kb on + strand, within CA265_RS03015at 750.397 kb on + strand, within CA265_RS03015at 750.405 kb on + strand, within CA265_RS03015at 750.405 kb on + strand, within CA265_RS03015at 750.503 kb on + strand, within CA265_RS03015at 750.609 kb on - strand, within CA265_RS03015at 750.662 kb on + strandat 750.682 kb on + strandat 750.683 kb on - strandat 750.683 kb on - strandat 750.684 kb on + strandat 750.684 kb on + strandat 750.706 kb on + strandat 750.803 kb on + strandat 750.804 kb on - strandat 750.822 kb on + strandat 750.827 kb on - strandat 750.838 kb on - strandat 750.863 kb on - strand, within CA265_RS03020at 750.877 kb on - strand, within CA265_RS03020at 750.903 kb on + strand, within CA265_RS03020at 750.904 kb on - strand, within CA265_RS03020at 750.931 kb on + strand, within CA265_RS03020at 750.932 kb on - strand, within CA265_RS03020at 750.949 kb on - strand, within CA265_RS03020at 751.014 kb on - strand, within CA265_RS03020at 751.100 kb on + strand, within CA265_RS03020at 751.167 kb on + strand, within CA265_RS03020at 751.168 kb on - strand, within CA265_RS03020at 751.200 kb on - strand, within CA265_RS03020at 751.205 kb on + strand, within CA265_RS03020at 751.213 kb on - strand, within CA265_RS03020at 751.269 kb on + strand, within CA265_RS03020at 751.270 kb on - strand, within CA265_RS03020at 751.398 kb on - strandat 751.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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749,317 - CA265_RS03010 0.55 +0.3
749,319 + CA265_RS03010 0.55 -0.4
749,327 + CA265_RS03010 0.56 -0.2
749,366 + CA265_RS03010 0.58 -0.1
749,367 - CA265_RS03010 0.58 -0.1
749,367 - CA265_RS03010 0.58 +0.3
749,370 + CA265_RS03010 0.58 +0.5
749,370 + CA265_RS03010 0.58 +0.2
749,371 - CA265_RS03010 0.58 -0.1
749,378 + CA265_RS03010 0.58 -1.2
749,379 - CA265_RS03010 0.58 +0.0
749,382 + CA265_RS03010 0.59 -0.8
749,382 + CA265_RS03010 0.59 -0.4
749,447 - CA265_RS03010 0.62 +0.3
749,454 + CA265_RS03010 0.62 +1.1
749,476 + CA265_RS03010 0.63 -0.0
749,477 - CA265_RS03010 0.63 +0.2
749,492 - CA265_RS03010 0.64 +0.2
749,497 - CA265_RS03010 0.65 +0.6
749,552 + +2.1
749,553 - CA265_RS03010 0.67 -0.2
749,561 + CA265_RS03010 0.68 -0.8
749,586 + CA265_RS03010 0.69 +0.2
749,601 + CA265_RS03010 0.70 -0.5
749,604 - CA265_RS03010 0.70 +0.4
749,607 - CA265_RS03010 0.70 -0.1
749,637 + CA265_RS03010 0.72 -0.9
749,638 - CA265_RS03010 0.72 -0.5
749,732 + CA265_RS03010 0.77 -0.5
749,758 + CA265_RS03010 0.78 -0.3
749,821 + CA265_RS03010 0.81 +0.5
749,822 - CA265_RS03010 0.81 +0.1
749,868 - CA265_RS03010 0.84 -1.3
749,943 - CA265_RS03010 0.88 +0.0
749,976 + CA265_RS03010 0.89 +0.9
750,019 + -0.6
750,019 + -0.9
750,020 - -2.5
750,074 + +0.1
750,074 + -1.2
750,075 - -0.1
750,075 - -1.7
750,075 - +0.3
750,177 + -0.3
750,178 - +0.6
750,178 - -0.0
750,234 + -0.1
750,239 + -0.3
750,263 + -0.5
750,269 - -0.8
750,269 - +0.9
750,352 + CA265_RS03015 0.26 +0.2
750,397 + CA265_RS03015 0.35 +0.5
750,405 + CA265_RS03015 0.37 +0.7
750,405 + CA265_RS03015 0.37 +0.6
750,503 + CA265_RS03015 0.57 -0.8
750,609 - CA265_RS03015 0.79 +0.9
750,662 + -0.4
750,682 + -0.5
750,683 - +0.1
750,683 - +1.0
750,684 + -0.6
750,684 + +0.4
750,706 + +0.0
750,803 + +0.3
750,804 - +0.8
750,822 + +0.4
750,827 - +0.5
750,838 - -0.3
750,863 - CA265_RS03020 0.12 +0.6
750,877 - CA265_RS03020 0.14 -0.6
750,903 + CA265_RS03020 0.19 -0.1
750,904 - CA265_RS03020 0.19 -0.6
750,931 + CA265_RS03020 0.23 +1.2
750,932 - CA265_RS03020 0.24 +0.9
750,949 - CA265_RS03020 0.27 +0.0
751,014 - CA265_RS03020 0.37 -0.1
751,100 + CA265_RS03020 0.52 -0.0
751,167 + CA265_RS03020 0.63 -0.1
751,168 - CA265_RS03020 0.63 -0.2
751,200 - CA265_RS03020 0.68 -0.7
751,205 + CA265_RS03020 0.69 -0.3
751,213 - CA265_RS03020 0.70 +0.7
751,269 + CA265_RS03020 0.80 +0.0
751,270 - CA265_RS03020 0.80 +0.2
751,398 - -0.4
751,455 + -0.7

Or see this region's nucleotide sequence