Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02155

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02150 and CA265_RS02155 are separated by 86 nucleotidesCA265_RS02155 and CA265_RS02160 are separated by 22 nucleotides CA265_RS02150: CA265_RS02150 - hypothetical protein, at 544,227 to 546,386 _RS02150 CA265_RS02155: CA265_RS02155 - hypothetical protein, at 546,473 to 547,144 _RS02155 CA265_RS02160: CA265_RS02160 - hypothetical protein, at 547,167 to 548,108 _RS02160 Position (kb) 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 545.484 kb on - strand, within CA265_RS02150at 545.503 kb on - strand, within CA265_RS02150at 545.526 kb on - strand, within CA265_RS02150at 545.532 kb on + strand, within CA265_RS02150at 545.633 kb on + strand, within CA265_RS02150at 545.634 kb on - strand, within CA265_RS02150at 545.720 kb on + strand, within CA265_RS02150at 545.727 kb on + strand, within CA265_RS02150at 545.728 kb on - strand, within CA265_RS02150at 545.728 kb on - strand, within CA265_RS02150at 545.729 kb on + strand, within CA265_RS02150at 545.730 kb on - strand, within CA265_RS02150at 545.730 kb on - strand, within CA265_RS02150at 545.730 kb on - strand, within CA265_RS02150at 545.795 kb on + strand, within CA265_RS02150at 545.796 kb on - strand, within CA265_RS02150at 545.882 kb on + strand, within CA265_RS02150at 545.959 kb on + strand, within CA265_RS02150at 545.967 kb on - strand, within CA265_RS02150at 545.978 kb on + strand, within CA265_RS02150at 546.013 kb on - strand, within CA265_RS02150at 546.032 kb on + strand, within CA265_RS02150at 546.059 kb on + strand, within CA265_RS02150at 546.102 kb on - strand, within CA265_RS02150at 546.125 kb on + strand, within CA265_RS02150at 546.126 kb on - strand, within CA265_RS02150at 546.126 kb on - strand, within CA265_RS02150at 546.129 kb on - strand, within CA265_RS02150at 546.149 kb on + strand, within CA265_RS02150at 546.243 kb on - strandat 546.279 kb on + strandat 546.280 kb on - strandat 546.373 kb on + strandat 546.378 kb on - strandat 546.378 kb on - strandat 546.385 kb on - strandat 546.418 kb on + strandat 546.453 kb on + strandat 546.465 kb on + strandat 546.465 kb on + strandat 546.482 kb on - strandat 546.517 kb on - strandat 546.519 kb on - strandat 546.567 kb on - strand, within CA265_RS02155at 546.586 kb on + strand, within CA265_RS02155at 546.631 kb on - strand, within CA265_RS02155at 546.632 kb on + strand, within CA265_RS02155at 546.633 kb on - strand, within CA265_RS02155at 546.633 kb on - strand, within CA265_RS02155at 546.692 kb on + strand, within CA265_RS02155at 546.693 kb on - strand, within CA265_RS02155at 546.748 kb on + strand, within CA265_RS02155at 546.749 kb on - strand, within CA265_RS02155at 546.779 kb on - strand, within CA265_RS02155at 546.779 kb on - strand, within CA265_RS02155at 546.781 kb on + strand, within CA265_RS02155at 546.842 kb on - strand, within CA265_RS02155at 546.870 kb on + strand, within CA265_RS02155at 546.893 kb on + strand, within CA265_RS02155at 546.893 kb on + strand, within CA265_RS02155at 546.894 kb on - strand, within CA265_RS02155at 546.912 kb on + strand, within CA265_RS02155at 546.913 kb on - strand, within CA265_RS02155at 546.928 kb on - strand, within CA265_RS02155at 547.007 kb on + strand, within CA265_RS02155at 547.102 kb on + strandat 547.117 kb on + strandat 547.126 kb on + strandat 547.126 kb on + strandat 547.127 kb on - strandat 547.142 kb on + strandat 547.149 kb on + strandat 547.193 kb on - strandat 547.256 kb on + strandat 547.347 kb on - strand, within CA265_RS02160at 547.372 kb on - strand, within CA265_RS02160at 547.398 kb on - strand, within CA265_RS02160at 547.398 kb on - strand, within CA265_RS02160at 547.403 kb on + strand, within CA265_RS02160at 547.404 kb on - strand, within CA265_RS02160at 547.407 kb on - strand, within CA265_RS02160at 547.457 kb on - strand, within CA265_RS02160at 547.520 kb on - strand, within CA265_RS02160at 547.538 kb on + strand, within CA265_RS02160at 547.539 kb on - strand, within CA265_RS02160at 547.563 kb on - strand, within CA265_RS02160at 547.589 kb on - strand, within CA265_RS02160at 547.648 kb on + strand, within CA265_RS02160at 547.653 kb on - strand, within CA265_RS02160at 547.724 kb on - strand, within CA265_RS02160at 547.741 kb on + strand, within CA265_RS02160at 547.742 kb on - strand, within CA265_RS02160at 547.821 kb on - strand, within CA265_RS02160at 547.823 kb on - strand, within CA265_RS02160at 547.868 kb on - strand, within CA265_RS02160at 547.926 kb on + strand, within CA265_RS02160at 547.949 kb on + strand, within CA265_RS02160at 547.989 kb on + strand, within CA265_RS02160at 547.990 kb on - strand, within CA265_RS02160at 547.993 kb on + strand, within CA265_RS02160at 548.021 kb on - strandat 548.037 kb on + strandat 548.037 kb on + strandat 548.046 kb on - strandat 548.046 kb on - strandat 548.088 kb on + strandat 548.106 kb on + strandat 548.138 kb on - strandat 548.142 kb on + strandat 548.144 kb on + strandat 548.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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545,484 - CA265_RS02150 0.58 +0.3
545,503 - CA265_RS02150 0.59 +2.6
545,526 - CA265_RS02150 0.60 +0.2
545,532 + CA265_RS02150 0.60 +0.2
545,633 + CA265_RS02150 0.65 -0.0
545,634 - CA265_RS02150 0.65 -0.1
545,720 + CA265_RS02150 0.69 +0.2
545,727 + CA265_RS02150 0.69 -0.4
545,728 - CA265_RS02150 0.69 -0.8
545,728 - CA265_RS02150 0.69 -0.4
545,729 + CA265_RS02150 0.70 -0.3
545,730 - CA265_RS02150 0.70 +0.2
545,730 - CA265_RS02150 0.70 -0.8
545,730 - CA265_RS02150 0.70 +0.1
545,795 + CA265_RS02150 0.73 +0.1
545,796 - CA265_RS02150 0.73 -0.3
545,882 + CA265_RS02150 0.77 -0.4
545,959 + CA265_RS02150 0.80 -0.6
545,967 - CA265_RS02150 0.81 -0.6
545,978 + CA265_RS02150 0.81 -0.1
546,013 - CA265_RS02150 0.83 -1.2
546,032 + CA265_RS02150 0.84 -0.2
546,059 + CA265_RS02150 0.85 +1.2
546,102 - CA265_RS02150 0.87 -0.6
546,125 + CA265_RS02150 0.88 +0.5
546,126 - CA265_RS02150 0.88 -0.4
546,126 - CA265_RS02150 0.88 -0.3
546,129 - CA265_RS02150 0.88 -0.3
546,149 + CA265_RS02150 0.89 -0.4
546,243 - +0.1
546,279 + -0.2
546,280 - -1.2
546,373 + +0.6
546,378 - -0.2
546,378 - -1.2
546,385 - -0.4
546,418 + -0.7
546,453 + +2.3
546,465 + -1.2
546,465 + +0.3
546,482 - -0.4
546,517 - -0.2
546,519 - -0.2
546,567 - CA265_RS02155 0.14 -0.2
546,586 + CA265_RS02155 0.17 +0.1
546,631 - CA265_RS02155 0.24 -1.1
546,632 + CA265_RS02155 0.24 -0.2
546,633 - CA265_RS02155 0.24 +0.6
546,633 - CA265_RS02155 0.24 -0.2
546,692 + CA265_RS02155 0.33 -0.1
546,693 - CA265_RS02155 0.33 -1.2
546,748 + CA265_RS02155 0.41 -1.3
546,749 - CA265_RS02155 0.41 -2.7
546,779 - CA265_RS02155 0.46 -0.3
546,779 - CA265_RS02155 0.46 +0.0
546,781 + CA265_RS02155 0.46 -0.2
546,842 - CA265_RS02155 0.55 -0.4
546,870 + CA265_RS02155 0.59 -1.3
546,893 + CA265_RS02155 0.62 -0.7
546,893 + CA265_RS02155 0.62 +0.2
546,894 - CA265_RS02155 0.63 -0.4
546,912 + CA265_RS02155 0.65 -1.2
546,913 - CA265_RS02155 0.65 -0.1
546,928 - CA265_RS02155 0.68 -0.4
547,007 + CA265_RS02155 0.79 -0.3
547,102 + -0.3
547,117 + -1.0
547,126 + -0.9
547,126 + -0.1
547,127 - -0.9
547,142 + -0.0
547,149 + -0.6
547,193 - +1.3
547,256 + +0.1
547,347 - CA265_RS02160 0.19 -0.4
547,372 - CA265_RS02160 0.22 -0.9
547,398 - CA265_RS02160 0.25 -0.2
547,398 - CA265_RS02160 0.25 +0.2
547,403 + CA265_RS02160 0.25 -0.1
547,404 - CA265_RS02160 0.25 -2.1
547,407 - CA265_RS02160 0.25 +0.1
547,457 - CA265_RS02160 0.31 +0.0
547,520 - CA265_RS02160 0.37 +0.7
547,538 + CA265_RS02160 0.39 +1.2
547,539 - CA265_RS02160 0.39 -0.7
547,563 - CA265_RS02160 0.42 -0.1
547,589 - CA265_RS02160 0.45 -0.4
547,648 + CA265_RS02160 0.51 -1.1
547,653 - CA265_RS02160 0.52 +0.3
547,724 - CA265_RS02160 0.59 -0.0
547,741 + CA265_RS02160 0.61 +0.2
547,742 - CA265_RS02160 0.61 -0.1
547,821 - CA265_RS02160 0.69 +1.2
547,823 - CA265_RS02160 0.70 -0.4
547,868 - CA265_RS02160 0.74 +0.2
547,926 + CA265_RS02160 0.81 +0.4
547,949 + CA265_RS02160 0.83 +0.5
547,989 + CA265_RS02160 0.87 +0.3
547,990 - CA265_RS02160 0.87 +0.3
547,993 + CA265_RS02160 0.88 -0.2
548,021 - +0.2
548,037 + -0.4
548,037 + -0.0
548,046 - +0.5
548,046 - -1.1
548,088 + -0.1
548,106 + +0.6
548,138 - +0.2
548,142 + -1.4
548,144 + +0.5
548,144 + -1.2

Or see this region's nucleotide sequence