Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01680

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01670 and CA265_RS01675 are separated by 4 nucleotidesCA265_RS01675 and CA265_RS01680 overlap by 38 nucleotidesCA265_RS01680 and CA265_RS01685 are separated by 3 nucleotidesCA265_RS01685 and CA265_RS01690 overlap by 4 nucleotides CA265_RS01670: CA265_RS01670 - hypothetical protein, at 428,449 to 429,117 _RS01670 CA265_RS01675: CA265_RS01675 - hypothetical protein, at 429,122 to 430,102 _RS01675 CA265_RS01680: CA265_RS01680 - hypothetical protein, at 430,065 to 431,030 _RS01680 CA265_RS01685: CA265_RS01685 - hypothetical protein, at 431,034 to 431,918 _RS01685 CA265_RS01690: CA265_RS01690 - hypothetical protein, at 431,915 to 432,670 _RS01690 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 429.098 kb on - strandat 429.118 kb on - strandat 429.156 kb on - strandat 429.159 kb on - strandat 429.170 kb on - strandat 429.192 kb on + strandat 429.224 kb on - strand, within CA265_RS01675at 429.256 kb on + strand, within CA265_RS01675at 429.378 kb on - strand, within CA265_RS01675at 429.438 kb on + strand, within CA265_RS01675at 429.438 kb on + strand, within CA265_RS01675at 429.439 kb on - strand, within CA265_RS01675at 429.439 kb on - strand, within CA265_RS01675at 429.466 kb on + strand, within CA265_RS01675at 429.496 kb on - strand, within CA265_RS01675at 429.512 kb on + strand, within CA265_RS01675at 429.522 kb on + strand, within CA265_RS01675at 429.602 kb on + strand, within CA265_RS01675at 429.602 kb on + strand, within CA265_RS01675at 429.612 kb on - strand, within CA265_RS01675at 429.631 kb on + strand, within CA265_RS01675at 429.631 kb on + strand, within CA265_RS01675at 429.632 kb on - strand, within CA265_RS01675at 429.708 kb on + strand, within CA265_RS01675at 429.709 kb on - strand, within CA265_RS01675at 429.815 kb on + strand, within CA265_RS01675at 429.818 kb on - strand, within CA265_RS01675at 429.819 kb on + strand, within CA265_RS01675at 429.819 kb on + strand, within CA265_RS01675at 429.819 kb on + strand, within CA265_RS01675at 429.819 kb on + strand, within CA265_RS01675at 429.838 kb on + strand, within CA265_RS01675at 429.838 kb on + strand, within CA265_RS01675at 429.850 kb on + strand, within CA265_RS01675at 429.851 kb on - strand, within CA265_RS01675at 429.858 kb on + strand, within CA265_RS01675at 429.859 kb on - strand, within CA265_RS01675at 429.889 kb on + strand, within CA265_RS01675at 429.895 kb on + strand, within CA265_RS01675at 429.896 kb on - strand, within CA265_RS01675at 429.935 kb on - strand, within CA265_RS01675at 429.956 kb on - strand, within CA265_RS01675at 430.024 kb on - strandat 430.024 kb on - strandat 430.024 kb on - strandat 430.024 kb on - strandat 430.027 kb on + strandat 430.027 kb on + strandat 430.028 kb on - strandat 430.032 kb on - strandat 430.033 kb on + strandat 430.033 kb on + strandat 430.033 kb on + strandat 430.034 kb on - strandat 430.037 kb on + strandat 430.107 kb on + strandat 430.112 kb on + strandat 430.112 kb on + strandat 430.113 kb on - strandat 430.113 kb on - strandat 430.113 kb on - strandat 430.113 kb on - strandat 430.125 kb on + strandat 430.234 kb on - strand, within CA265_RS01680at 430.268 kb on - strand, within CA265_RS01680at 430.268 kb on - strand, within CA265_RS01680at 430.299 kb on + strand, within CA265_RS01680at 430.300 kb on - strand, within CA265_RS01680at 430.356 kb on + strand, within CA265_RS01680at 430.422 kb on + strand, within CA265_RS01680at 430.422 kb on + strand, within CA265_RS01680at 430.445 kb on + strand, within CA265_RS01680at 430.446 kb on - strand, within CA265_RS01680at 430.523 kb on + strand, within CA265_RS01680at 430.523 kb on + strand, within CA265_RS01680at 430.561 kb on + strand, within CA265_RS01680at 430.569 kb on - strand, within CA265_RS01680at 430.590 kb on + strand, within CA265_RS01680at 430.594 kb on + strand, within CA265_RS01680at 430.594 kb on + strand, within CA265_RS01680at 430.597 kb on + strand, within CA265_RS01680at 430.598 kb on - strand, within CA265_RS01680at 430.599 kb on + strand, within CA265_RS01680at 430.599 kb on + strand, within CA265_RS01680at 430.655 kb on + strand, within CA265_RS01680at 430.685 kb on + strand, within CA265_RS01680at 430.685 kb on + strand, within CA265_RS01680at 430.699 kb on - strand, within CA265_RS01680at 430.705 kb on - strand, within CA265_RS01680at 430.725 kb on - strand, within CA265_RS01680at 430.740 kb on + strand, within CA265_RS01680at 430.741 kb on - strand, within CA265_RS01680at 430.741 kb on - strand, within CA265_RS01680at 430.741 kb on - strand, within CA265_RS01680at 430.807 kb on - strand, within CA265_RS01680at 430.925 kb on + strand, within CA265_RS01680at 430.983 kb on + strandat 430.984 kb on - strandat 430.986 kb on - strandat 430.986 kb on - strandat 430.986 kb on - strandat 430.987 kb on + strandat 431.104 kb on + strandat 431.104 kb on + strandat 431.300 kb on + strand, within CA265_RS01685at 431.301 kb on - strand, within CA265_RS01685at 431.352 kb on + strand, within CA265_RS01685at 431.353 kb on - strand, within CA265_RS01685at 431.353 kb on - strand, within CA265_RS01685at 431.361 kb on + strand, within CA265_RS01685at 431.361 kb on + strand, within CA265_RS01685at 431.411 kb on - strand, within CA265_RS01685at 431.415 kb on + strand, within CA265_RS01685at 431.420 kb on + strand, within CA265_RS01685at 431.427 kb on + strand, within CA265_RS01685at 431.484 kb on + strand, within CA265_RS01685at 431.506 kb on - strand, within CA265_RS01685at 431.506 kb on - strand, within CA265_RS01685at 431.535 kb on + strand, within CA265_RS01685at 431.612 kb on + strand, within CA265_RS01685at 431.613 kb on - strand, within CA265_RS01685at 431.671 kb on + strand, within CA265_RS01685at 431.689 kb on - strand, within CA265_RS01685at 431.697 kb on - strand, within CA265_RS01685at 431.772 kb on + strand, within CA265_RS01685at 431.772 kb on + strand, within CA265_RS01685at 431.800 kb on - strand, within CA265_RS01685at 431.837 kb on + strandat 431.848 kb on + strandat 431.848 kb on + strandat 431.857 kb on - strandat 431.979 kb on - strandat 431.980 kb on + strandat 431.981 kb on - strandat 432.017 kb on - strand, within CA265_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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429,098 - +0.1
429,118 - +0.1
429,156 - -0.2
429,159 - -0.4
429,170 - -0.2
429,192 + +0.1
429,224 - CA265_RS01675 0.10 +0.4
429,256 + CA265_RS01675 0.14 -0.3
429,378 - CA265_RS01675 0.26 +0.2
429,438 + CA265_RS01675 0.32 -0.0
429,438 + CA265_RS01675 0.32 +0.2
429,439 - CA265_RS01675 0.32 +0.8
429,439 - CA265_RS01675 0.32 -0.1
429,466 + CA265_RS01675 0.35 +0.3
429,496 - CA265_RS01675 0.38 +2.4
429,512 + CA265_RS01675 0.40 +0.2
429,522 + CA265_RS01675 0.41 -0.3
429,602 + CA265_RS01675 0.49 +0.2
429,602 + CA265_RS01675 0.49 -0.7
429,612 - CA265_RS01675 0.50 -1.2
429,631 + CA265_RS01675 0.52 -0.3
429,631 + CA265_RS01675 0.52 -0.2
429,632 - CA265_RS01675 0.52 -0.3
429,708 + CA265_RS01675 0.60 -0.7
429,709 - CA265_RS01675 0.60 -0.7
429,815 + CA265_RS01675 0.71 +0.3
429,818 - CA265_RS01675 0.71 +0.4
429,819 + CA265_RS01675 0.71 +0.8
429,819 + CA265_RS01675 0.71 -1.1
429,819 + CA265_RS01675 0.71 -0.1
429,819 + CA265_RS01675 0.71 -0.5
429,838 + CA265_RS01675 0.73 +2.1
429,838 + CA265_RS01675 0.73 +0.1
429,850 + CA265_RS01675 0.74 -0.4
429,851 - CA265_RS01675 0.74 -0.0
429,858 + CA265_RS01675 0.75 +0.9
429,859 - CA265_RS01675 0.75 +1.5
429,889 + CA265_RS01675 0.78 -0.2
429,895 + CA265_RS01675 0.79 +0.1
429,896 - CA265_RS01675 0.79 -0.4
429,935 - CA265_RS01675 0.83 -0.0
429,956 - CA265_RS01675 0.85 -0.4
430,024 - -1.0
430,024 - +0.2
430,024 - -0.7
430,024 - +0.2
430,027 + +0.4
430,027 + -1.3
430,028 - -1.4
430,032 - +0.1
430,033 + +0.6
430,033 + +0.1
430,033 + -0.7
430,034 - -1.2
430,037 + +0.3
430,107 + +0.5
430,112 + -0.4
430,112 + +1.4
430,113 - -0.4
430,113 - -0.2
430,113 - +0.6
430,113 - -1.5
430,125 + +0.6
430,234 - CA265_RS01680 0.17 +1.1
430,268 - CA265_RS01680 0.21 +0.7
430,268 - CA265_RS01680 0.21 +1.4
430,299 + CA265_RS01680 0.24 +2.0
430,300 - CA265_RS01680 0.24 -0.0
430,356 + CA265_RS01680 0.30 -0.2
430,422 + CA265_RS01680 0.37 +0.3
430,422 + CA265_RS01680 0.37 +0.7
430,445 + CA265_RS01680 0.39 +0.2
430,446 - CA265_RS01680 0.39 +0.4
430,523 + CA265_RS01680 0.47 -0.2
430,523 + CA265_RS01680 0.47 +0.5
430,561 + CA265_RS01680 0.51 +0.3
430,569 - CA265_RS01680 0.52 +0.3
430,590 + CA265_RS01680 0.54 +0.1
430,594 + CA265_RS01680 0.55 +0.6
430,594 + CA265_RS01680 0.55 +0.1
430,597 + CA265_RS01680 0.55 -0.6
430,598 - CA265_RS01680 0.55 +0.4
430,599 + CA265_RS01680 0.55 -1.7
430,599 + CA265_RS01680 0.55 -0.2
430,655 + CA265_RS01680 0.61 +1.3
430,685 + CA265_RS01680 0.64 +0.4
430,685 + CA265_RS01680 0.64 -0.9
430,699 - CA265_RS01680 0.66 -0.3
430,705 - CA265_RS01680 0.66 +0.8
430,725 - CA265_RS01680 0.68 +1.1
430,740 + CA265_RS01680 0.70 +0.9
430,741 - CA265_RS01680 0.70 +0.9
430,741 - CA265_RS01680 0.70 +1.1
430,741 - CA265_RS01680 0.70 -0.4
430,807 - CA265_RS01680 0.77 +1.3
430,925 + CA265_RS01680 0.89 +0.2
430,983 + +0.1
430,984 - -1.8
430,986 - +0.5
430,986 - +0.2
430,986 - +1.6
430,987 + -0.1
431,104 + -0.2
431,104 + +0.3
431,300 + CA265_RS01685 0.30 +0.5
431,301 - CA265_RS01685 0.30 +0.0
431,352 + CA265_RS01685 0.36 -0.5
431,353 - CA265_RS01685 0.36 -1.1
431,353 - CA265_RS01685 0.36 +4.0
431,361 + CA265_RS01685 0.37 -0.5
431,361 + CA265_RS01685 0.37 +0.3
431,411 - CA265_RS01685 0.43 +0.2
431,415 + CA265_RS01685 0.43 +0.0
431,420 + CA265_RS01685 0.44 -0.4
431,427 + CA265_RS01685 0.44 +0.4
431,484 + CA265_RS01685 0.51 -0.0
431,506 - CA265_RS01685 0.53 -0.2
431,506 - CA265_RS01685 0.53 -0.8
431,535 + CA265_RS01685 0.57 +0.5
431,612 + CA265_RS01685 0.65 +0.1
431,613 - CA265_RS01685 0.65 -0.8
431,671 + CA265_RS01685 0.72 +0.3
431,689 - CA265_RS01685 0.74 +0.2
431,697 - CA265_RS01685 0.75 +1.5
431,772 + CA265_RS01685 0.83 -0.5
431,772 + CA265_RS01685 0.83 +1.2
431,800 - CA265_RS01685 0.87 +1.0
431,837 + -0.5
431,848 + +0.4
431,848 + +0.5
431,857 - -0.0
431,979 - -0.1
431,980 + -0.0
431,981 - -0.1
432,017 - CA265_RS01690 0.13 +0.0

Or see this region's nucleotide sequence