Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01375 and CA265_RS01380 are separated by 3 nucleotides CA265_RS01380 and CA265_RS01385 are separated by 187 nucleotides CA265_RS01385 and CA265_RS01390 overlap by 17 nucleotides
CA265_RS01375: CA265_RS01375 - cytochrome C oxidase Cbb3, at 346,111 to 348,252
_RS01375
CA265_RS01380: CA265_RS01380 - hypothetical protein, at 348,256 to 348,438
_RS01380
CA265_RS01385: CA265_RS01385 - cytochrome C, at 348,626 to 349,393
_RS01385
CA265_RS01390: CA265_RS01390 - cytochrome c oxidase accessory protein CcoG, at 349,377 to 350,756
_RS01390
Position (kb) 348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 347.273 kb on + strand, within CA265_RS01375 at 347.273 kb on + strand, within CA265_RS01375 at 347.398 kb on - strand, within CA265_RS01375 at 347.399 kb on + strand, within CA265_RS01375 at 347.438 kb on - strand, within CA265_RS01375 at 347.438 kb on - strand, within CA265_RS01375 at 347.451 kb on - strand, within CA265_RS01375 at 347.464 kb on + strand, within CA265_RS01375 at 347.464 kb on + strand, within CA265_RS01375 at 347.626 kb on - strand, within CA265_RS01375 at 347.744 kb on - strand, within CA265_RS01375 at 347.744 kb on - strand, within CA265_RS01375 at 347.762 kb on + strand, within CA265_RS01375 at 347.823 kb on + strand, within CA265_RS01375 at 347.872 kb on - strand, within CA265_RS01375 at 347.912 kb on - strand, within CA265_RS01375 at 347.929 kb on + strand, within CA265_RS01375 at 347.930 kb on - strand, within CA265_RS01375 at 347.973 kb on + strand, within CA265_RS01375 at 348.082 kb on - strand at 348.101 kb on + strand at 348.134 kb on + strand at 348.173 kb on + strand at 348.222 kb on + strand at 348.279 kb on - strand, within CA265_RS01380 at 348.295 kb on + strand, within CA265_RS01380 at 348.296 kb on - strand, within CA265_RS01380 at 348.362 kb on + strand, within CA265_RS01380 at 348.399 kb on + strand, within CA265_RS01380 at 348.448 kb on - strand at 348.462 kb on + strand at 348.556 kb on + strand at 348.557 kb on - strand at 348.620 kb on - strand at 348.642 kb on + strand at 348.643 kb on - strand at 348.656 kb on + strand at 348.684 kb on + strand at 348.794 kb on + strand, within CA265_RS01385 at 348.795 kb on - strand, within CA265_RS01385 at 348.905 kb on + strand, within CA265_RS01385 at 348.971 kb on + strand, within CA265_RS01385 at 348.991 kb on + strand, within CA265_RS01385 at 349.024 kb on + strand, within CA265_RS01385 at 349.025 kb on - strand, within CA265_RS01385 at 349.055 kb on - strand, within CA265_RS01385 at 349.131 kb on - strand, within CA265_RS01385 at 349.162 kb on - strand, within CA265_RS01385 at 349.256 kb on - strand, within CA265_RS01385 at 349.261 kb on - strand, within CA265_RS01385 at 349.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 347,273 + CA265_RS01375 0.54 +0.1 347,273 + CA265_RS01375 0.54 +0.0 347,398 - CA265_RS01375 0.60 +0.7 347,399 + CA265_RS01375 0.60 +0.3 347,438 - CA265_RS01375 0.62 +0.4 347,438 - CA265_RS01375 0.62 -0.0 347,451 - CA265_RS01375 0.63 -0.0 347,464 + CA265_RS01375 0.63 +0.1 347,464 + CA265_RS01375 0.63 +0.2 347,626 - CA265_RS01375 0.71 -0.2 347,744 - CA265_RS01375 0.76 +0.4 347,744 - CA265_RS01375 0.76 +0.0 347,762 + CA265_RS01375 0.77 +0.2 347,823 + CA265_RS01375 0.80 +1.1 347,872 - CA265_RS01375 0.82 +0.7 347,912 - CA265_RS01375 0.84 +0.1 347,929 + CA265_RS01375 0.85 -0.9 347,930 - CA265_RS01375 0.85 -0.2 347,973 + CA265_RS01375 0.87 +0.4 348,082 - -0.3 348,101 + -0.1 348,134 + +0.3 348,173 + +0.7 348,222 + -1.2 348,279 - CA265_RS01380 0.13 -2.9 348,295 + CA265_RS01380 0.21 +0.3 348,296 - CA265_RS01380 0.22 -0.5 348,362 + CA265_RS01380 0.58 -0.5 348,399 + CA265_RS01380 0.78 -0.8 348,448 - -0.5 348,462 + +0.3 348,556 + -0.9 348,557 - +0.2 348,620 - -0.1 348,642 + -0.3 348,643 - -0.1 348,656 + +0.1 348,684 + -1.2 348,794 + CA265_RS01385 0.22 +0.2 348,795 - CA265_RS01385 0.22 -1.8 348,905 + CA265_RS01385 0.36 -0.9 348,971 + CA265_RS01385 0.45 +0.6 348,991 + CA265_RS01385 0.48 +0.2 349,024 + CA265_RS01385 0.52 +0.9 349,025 - CA265_RS01385 0.52 +0.9 349,055 - CA265_RS01385 0.56 +0.1 349,131 - CA265_RS01385 0.66 -0.3 349,162 - CA265_RS01385 0.70 -0.2 349,256 - CA265_RS01385 0.82 -0.3 349,261 - CA265_RS01385 0.83 -0.2 349,330 - -0.2
Or see this region's nucleotide sequence