Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01315 and CA265_RS01320 are separated by 33 nucleotides CA265_RS01320 and CA265_RS01325 are separated by 239 nucleotides
CA265_RS01315: CA265_RS01315 - alpha-1,3-galactosidase B, at 331,823 to 333,628
_RS01315
CA265_RS01320: CA265_RS01320 - hypothetical protein, at 333,662 to 334,006
_RS01320
CA265_RS01325: CA265_RS01325 - hypothetical protein, at 334,246 to 335,121
_RS01325
Position (kb) 333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.665 kb on + strand, within CA265_RS01315 at 332.665 kb on + strand, within CA265_RS01315 at 332.764 kb on + strand, within CA265_RS01315 at 332.810 kb on - strand, within CA265_RS01315 at 332.814 kb on + strand, within CA265_RS01315 at 332.814 kb on + strand, within CA265_RS01315 at 332.874 kb on - strand, within CA265_RS01315 at 332.874 kb on - strand, within CA265_RS01315 at 332.874 kb on - strand, within CA265_RS01315 at 332.875 kb on + strand, within CA265_RS01315 at 332.925 kb on + strand, within CA265_RS01315 at 332.933 kb on - strand, within CA265_RS01315 at 333.028 kb on + strand, within CA265_RS01315 at 333.064 kb on - strand, within CA265_RS01315 at 333.149 kb on - strand, within CA265_RS01315 at 333.214 kb on + strand, within CA265_RS01315 at 333.215 kb on - strand, within CA265_RS01315 at 333.286 kb on - strand, within CA265_RS01315 at 333.302 kb on - strand, within CA265_RS01315 at 333.325 kb on + strand, within CA265_RS01315 at 333.326 kb on - strand, within CA265_RS01315 at 333.329 kb on + strand, within CA265_RS01315 at 333.329 kb on + strand, within CA265_RS01315 at 333.329 kb on + strand, within CA265_RS01315 at 333.349 kb on + strand, within CA265_RS01315 at 333.496 kb on + strand at 333.586 kb on + strand at 333.607 kb on - strand at 333.607 kb on - strand at 333.646 kb on - strand at 333.664 kb on - strand at 333.668 kb on - strand at 333.712 kb on + strand, within CA265_RS01320 at 333.713 kb on - strand, within CA265_RS01320 at 333.773 kb on - strand, within CA265_RS01320 at 333.807 kb on - strand, within CA265_RS01320 at 334.013 kb on + strand at 334.016 kb on - strand at 334.096 kb on - strand at 334.134 kb on - strand at 334.231 kb on + strand at 334.241 kb on - strand at 334.262 kb on + strand at 334.327 kb on - strand at 334.329 kb on - strand at 334.350 kb on - strand, within CA265_RS01325 at 334.350 kb on - strand, within CA265_RS01325 at 334.423 kb on - strand, within CA265_RS01325 at 334.547 kb on + strand, within CA265_RS01325 at 334.563 kb on + strand, within CA265_RS01325 at 334.564 kb on - strand, within CA265_RS01325 at 334.638 kb on + strand, within CA265_RS01325 at 334.677 kb on - strand, within CA265_RS01325 at 334.773 kb on + strand, within CA265_RS01325 at 334.800 kb on + strand, within CA265_RS01325 at 334.801 kb on - strand, within CA265_RS01325 at 334.801 kb on - strand, within CA265_RS01325 at 334.818 kb on + strand, within CA265_RS01325 at 334.825 kb on - strand, within CA265_RS01325 at 334.880 kb on + strand, within CA265_RS01325 at 334.906 kb on + strand, within CA265_RS01325 at 334.907 kb on - strand, within CA265_RS01325 at 334.914 kb on + strand, within CA265_RS01325 at 334.914 kb on + strand, within CA265_RS01325 at 334.915 kb on - strand, within CA265_RS01325 at 334.931 kb on + strand, within CA265_RS01325
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 332,665 + CA265_RS01315 0.47 +1.4 332,665 + CA265_RS01315 0.47 +2.0 332,764 + CA265_RS01315 0.52 -1.3 332,810 - CA265_RS01315 0.55 -0.7 332,814 + CA265_RS01315 0.55 +0.1 332,814 + CA265_RS01315 0.55 -0.0 332,874 - CA265_RS01315 0.58 -1.4 332,874 - CA265_RS01315 0.58 -0.0 332,874 - CA265_RS01315 0.58 +0.4 332,875 + CA265_RS01315 0.58 +1.0 332,925 + CA265_RS01315 0.61 -0.3 332,933 - CA265_RS01315 0.61 -0.7 333,028 + CA265_RS01315 0.67 -0.3 333,064 - CA265_RS01315 0.69 +0.2 333,149 - CA265_RS01315 0.73 -0.2 333,214 + CA265_RS01315 0.77 -0.8 333,215 - CA265_RS01315 0.77 -0.3 333,286 - CA265_RS01315 0.81 -1.1 333,302 - CA265_RS01315 0.82 -0.2 333,325 + CA265_RS01315 0.83 -0.7 333,326 - CA265_RS01315 0.83 +0.3 333,329 + CA265_RS01315 0.83 +0.5 333,329 + CA265_RS01315 0.83 +0.4 333,329 + CA265_RS01315 0.83 +0.5 333,349 + CA265_RS01315 0.84 -1.2 333,496 + -0.2 333,586 + -1.6 333,607 - +0.2 333,607 - -0.4 333,646 - +0.6 333,664 - -1.0 333,668 - -0.1 333,712 + CA265_RS01320 0.14 -2.5 333,713 - CA265_RS01320 0.15 -0.1 333,773 - CA265_RS01320 0.32 -0.8 333,807 - CA265_RS01320 0.42 -0.6 334,013 + +1.0 334,016 - -0.4 334,096 - +1.2 334,134 - +0.4 334,231 + +1.7 334,241 - -0.5 334,262 + +0.1 334,327 - -0.6 334,329 - -0.0 334,350 - CA265_RS01325 0.12 -0.9 334,350 - CA265_RS01325 0.12 +0.2 334,423 - CA265_RS01325 0.20 -0.5 334,547 + CA265_RS01325 0.34 -0.5 334,563 + CA265_RS01325 0.36 -0.2 334,564 - CA265_RS01325 0.36 -0.0 334,638 + CA265_RS01325 0.45 -0.5 334,677 - CA265_RS01325 0.49 +1.2 334,773 + CA265_RS01325 0.60 +0.2 334,800 + CA265_RS01325 0.63 +0.1 334,801 - CA265_RS01325 0.63 -0.1 334,801 - CA265_RS01325 0.63 -1.1 334,818 + CA265_RS01325 0.65 -2.7 334,825 - CA265_RS01325 0.66 -0.3 334,880 + CA265_RS01325 0.72 -0.2 334,906 + CA265_RS01325 0.75 -0.8 334,907 - CA265_RS01325 0.75 -0.8 334,914 + CA265_RS01325 0.76 -0.8 334,914 + CA265_RS01325 0.76 +0.8 334,915 - CA265_RS01325 0.76 -1.1 334,931 + CA265_RS01325 0.78 -2.3
Or see this region's nucleotide sequence