Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01185 and CA265_RS01190 are separated by 24 nucleotides CA265_RS01190 and CA265_RS01195 are separated by 18 nucleotides CA265_RS01195 and CA265_RS01200 are separated by 34 nucleotides CA265_RS01200 and CA265_RS01205 are separated by 21 nucleotides CA265_RS01205 and CA265_RS01210 are separated by 203 nucleotides
CA265_RS01185: CA265_RS01185 - hypothetical protein, at 298,066 to 298,494
_RS01185
CA265_RS01190: CA265_RS01190 - hypothetical protein, at 298,519 to 298,962
_RS01190
CA265_RS01195: CA265_RS01195 - hypothetical protein, at 298,981 to 299,394
_RS01195
CA265_RS01200: CA265_RS01200 - hypothetical protein, at 299,429 to 299,950
_RS01200
CA265_RS01205: CA265_RS01205 - import component protein, at 299,972 to 300,304
_RS01205
CA265_RS01210: CA265_RS01210 - LuxR family transcriptional regulator, at 300,508 to 302,385
_RS01210
Position (kb) 299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.482 kb on + strand at 298.484 kb on + strand at 298.531 kb on - strand at 298.532 kb on + strand at 298.563 kb on + strand at 298.575 kb on + strand, within CA265_RS01190 at 298.583 kb on + strand, within CA265_RS01190 at 298.584 kb on - strand, within CA265_RS01190 at 298.632 kb on - strand, within CA265_RS01190 at 298.634 kb on + strand, within CA265_RS01190 at 298.664 kb on - strand, within CA265_RS01190 at 298.678 kb on - strand, within CA265_RS01190 at 298.691 kb on + strand, within CA265_RS01190 at 298.692 kb on - strand, within CA265_RS01190 at 298.721 kb on + strand, within CA265_RS01190 at 298.743 kb on - strand, within CA265_RS01190 at 298.767 kb on + strand, within CA265_RS01190 at 298.768 kb on - strand, within CA265_RS01190 at 298.768 kb on - strand, within CA265_RS01190 at 298.769 kb on + strand, within CA265_RS01190 at 298.769 kb on + strand, within CA265_RS01190 at 298.837 kb on - strand, within CA265_RS01190 at 298.867 kb on - strand, within CA265_RS01190 at 298.949 kb on - strand at 298.982 kb on + strand at 299.033 kb on - strand, within CA265_RS01195 at 299.045 kb on - strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.082 kb on + strand, within CA265_RS01195 at 299.107 kb on - strand, within CA265_RS01195 at 299.151 kb on + strand, within CA265_RS01195 at 299.152 kb on - strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.250 kb on + strand, within CA265_RS01195 at 299.281 kb on + strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.292 kb on + strand, within CA265_RS01195 at 299.368 kb on - strand at 299.378 kb on - strand at 299.406 kb on + strand at 299.407 kb on - strand at 299.427 kb on - strand at 299.431 kb on - strand at 299.441 kb on - strand at 299.499 kb on + strand, within CA265_RS01200 at 299.612 kb on + strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.698 kb on + strand, within CA265_RS01200 at 299.730 kb on - strand, within CA265_RS01200 at 299.754 kb on + strand at 299.755 kb on - strand, within CA265_RS01200 at 299.755 kb on - strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.758 kb on - strand, within CA265_RS01200 at 299.764 kb on + strand, within CA265_RS01200 at 299.795 kb on - strand, within CA265_RS01200 at 299.810 kb on - strand, within CA265_RS01200 at 299.876 kb on + strand, within CA265_RS01200 at 299.877 kb on - strand, within CA265_RS01200 at 300.021 kb on - strand, within CA265_RS01205 at 300.053 kb on - strand, within CA265_RS01205 at 300.053 kb on - strand, within CA265_RS01205 at 300.071 kb on + strand, within CA265_RS01205 at 300.072 kb on - strand, within CA265_RS01205 at 300.144 kb on - strand, within CA265_RS01205 at 300.149 kb on - strand, within CA265_RS01205 at 300.153 kb on - strand, within CA265_RS01205 at 300.172 kb on + strand, within CA265_RS01205 at 300.202 kb on + strand, within CA265_RS01205 at 300.203 kb on - strand, within CA265_RS01205 at 300.268 kb on + strand, within CA265_RS01205 at 300.268 kb on + strand, within CA265_RS01205 at 300.269 kb on - strand, within CA265_RS01205 at 300.379 kb on + strand at 300.379 kb on + strand at 300.446 kb on + strand at 300.446 kb on + strand at 300.447 kb on - strand at 300.533 kb on + strand at 300.534 kb on - strand at 300.588 kb on - strand at 300.589 kb on + strand at 300.589 kb on + strand at 300.641 kb on + strand at 300.648 kb on - strand at 300.654 kb on - strand at 300.772 kb on + strand, within CA265_RS01210 at 300.794 kb on - strand, within CA265_RS01210 at 300.794 kb on - strand, within CA265_RS01210 at 300.844 kb on - strand, within CA265_RS01210 at 300.847 kb on + strand, within CA265_RS01210 at 300.847 kb on + strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.851 kb on - strand, within CA265_RS01210 at 300.890 kb on + strand, within CA265_RS01210 at 300.917 kb on + strand, within CA265_RS01210 at 300.917 kb on + strand, within CA265_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 298,482 + -0.3 298,484 + -0.9 298,531 - +1.5 298,532 + -0.0 298,563 + +0.5 298,575 + CA265_RS01190 0.13 -0.0 298,583 + CA265_RS01190 0.14 -0.1 298,584 - CA265_RS01190 0.15 -0.3 298,632 - CA265_RS01190 0.25 +0.3 298,634 + CA265_RS01190 0.26 -0.2 298,664 - CA265_RS01190 0.33 +0.1 298,678 - CA265_RS01190 0.36 +1.2 298,691 + CA265_RS01190 0.39 -0.8 298,692 - CA265_RS01190 0.39 +0.2 298,721 + CA265_RS01190 0.45 +0.8 298,743 - CA265_RS01190 0.50 -3.0 298,767 + CA265_RS01190 0.56 -0.6 298,768 - CA265_RS01190 0.56 -0.3 298,768 - CA265_RS01190 0.56 +0.3 298,769 + CA265_RS01190 0.56 -0.1 298,769 + CA265_RS01190 0.56 -0.2 298,837 - CA265_RS01190 0.72 +0.4 298,867 - CA265_RS01190 0.78 +0.5 298,949 - -0.3 298,982 + +0.0 299,033 - CA265_RS01195 0.13 +0.2 299,045 - CA265_RS01195 0.15 +1.5 299,078 + CA265_RS01195 0.23 +0.7 299,078 + CA265_RS01195 0.23 +0.4 299,082 + CA265_RS01195 0.24 -0.1 299,107 - CA265_RS01195 0.30 -0.6 299,151 + CA265_RS01195 0.41 +0.3 299,152 - CA265_RS01195 0.41 -0.1 299,186 + CA265_RS01195 0.50 -0.8 299,186 + CA265_RS01195 0.50 -1.3 299,250 + CA265_RS01195 0.65 +0.3 299,281 + CA265_RS01195 0.72 +0.6 299,282 - CA265_RS01195 0.73 +0.2 299,282 - CA265_RS01195 0.73 -0.1 299,292 + CA265_RS01195 0.75 -0.9 299,368 - +0.7 299,378 - -0.8 299,406 + -1.2 299,407 - -0.3 299,427 - +0.3 299,431 - +0.4 299,441 - +0.8 299,499 + CA265_RS01200 0.13 +1.7 299,612 + CA265_RS01200 0.35 +0.2 299,619 - CA265_RS01200 0.36 +0.0 299,619 - CA265_RS01200 0.36 +0.9 299,698 + CA265_RS01200 0.52 +2.0 299,730 - CA265_RS01200 0.58 -0.2 299,754 + +0.7 299,755 - CA265_RS01200 0.62 +2.7 299,755 - CA265_RS01200 0.62 +0.8 299,757 + CA265_RS01200 0.63 +0.8 299,757 + CA265_RS01200 0.63 -0.9 299,758 - CA265_RS01200 0.63 -1.4 299,764 + CA265_RS01200 0.64 -0.1 299,795 - CA265_RS01200 0.70 -0.9 299,810 - CA265_RS01200 0.73 +1.0 299,876 + CA265_RS01200 0.86 +0.6 299,877 - CA265_RS01200 0.86 -0.7 300,021 - CA265_RS01205 0.15 +0.5 300,053 - CA265_RS01205 0.24 -0.0 300,053 - CA265_RS01205 0.24 -1.4 300,071 + CA265_RS01205 0.30 +0.2 300,072 - CA265_RS01205 0.30 -0.6 300,144 - CA265_RS01205 0.52 +0.9 300,149 - CA265_RS01205 0.53 -0.2 300,153 - CA265_RS01205 0.54 +0.3 300,172 + CA265_RS01205 0.60 +0.2 300,202 + CA265_RS01205 0.69 +0.4 300,203 - CA265_RS01205 0.69 +0.0 300,268 + CA265_RS01205 0.89 +0.5 300,268 + CA265_RS01205 0.89 +0.3 300,269 - CA265_RS01205 0.89 +1.6 300,379 + -0.0 300,379 + -1.1 300,446 + +0.6 300,446 + -0.1 300,447 - -0.1 300,533 + -0.0 300,534 - -0.2 300,588 - -0.2 300,589 + +0.4 300,589 + +0.1 300,641 + -0.0 300,648 - +0.8 300,654 - +0.4 300,772 + CA265_RS01210 0.14 +1.4 300,794 - CA265_RS01210 0.15 +0.1 300,794 - CA265_RS01210 0.15 +0.1 300,844 - CA265_RS01210 0.18 +0.4 300,847 + CA265_RS01210 0.18 +0.0 300,847 + CA265_RS01210 0.18 -0.2 300,848 - CA265_RS01210 0.18 +0.1 300,848 - CA265_RS01210 0.18 +0.5 300,848 - CA265_RS01210 0.18 -0.3 300,848 - CA265_RS01210 0.18 +0.6 300,851 - CA265_RS01210 0.18 +1.1 300,890 + CA265_RS01210 0.20 -0.5 300,917 + CA265_RS01210 0.22 -0.1 300,917 + CA265_RS01210 0.22 +1.0
Or see this region's nucleotide sequence