Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01160 and CA265_RS01165 are separated by 270 nucleotides CA265_RS01165 and CA265_RS01170 are separated by 6 nucleotides
CA265_RS01160: CA265_RS01160 - hypothetical protein, at 293,300 to 294,721
_RS01160
CA265_RS01165: CA265_RS01165 - hypothetical protein, at 294,992 to 295,540
_RS01165
CA265_RS01170: CA265_RS01170 - hypothetical protein, at 295,547 to 296,641
_RS01170
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.006 kb on + strand, within CA265_RS01160 at 294.007 kb on - strand, within CA265_RS01160 at 294.066 kb on + strand, within CA265_RS01160 at 294.068 kb on + strand, within CA265_RS01160 at 294.069 kb on - strand, within CA265_RS01160 at 294.100 kb on + strand, within CA265_RS01160 at 294.108 kb on + strand, within CA265_RS01160 at 294.108 kb on + strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.169 kb on - strand, within CA265_RS01160 at 294.248 kb on - strand, within CA265_RS01160 at 294.358 kb on + strand, within CA265_RS01160 at 294.368 kb on + strand, within CA265_RS01160 at 294.395 kb on + strand, within CA265_RS01160 at 294.401 kb on - strand, within CA265_RS01160 at 294.438 kb on + strand, within CA265_RS01160 at 294.439 kb on - strand, within CA265_RS01160 at 294.439 kb on - strand, within CA265_RS01160 at 294.475 kb on + strand, within CA265_RS01160 at 294.484 kb on + strand, within CA265_RS01160 at 294.543 kb on - strand, within CA265_RS01160 at 294.567 kb on - strand, within CA265_RS01160 at 294.585 kb on - strand at 294.589 kb on + strand at 294.590 kb on - strand at 294.590 kb on - strand at 294.593 kb on - strand at 294.596 kb on - strand at 294.627 kb on - strand at 294.655 kb on + strand at 294.661 kb on + strand at 294.744 kb on - strand at 294.774 kb on - strand at 294.840 kb on + strand at 294.845 kb on + strand at 294.845 kb on + strand at 294.852 kb on + strand at 294.852 kb on + strand at 294.950 kb on - strand at 294.961 kb on + strand at 294.991 kb on - strand at 295.014 kb on + strand at 295.028 kb on + strand at 295.035 kb on - strand at 295.092 kb on + strand at 295.304 kb on - strand, within CA265_RS01165 at 295.436 kb on - strand, within CA265_RS01165 at 295.449 kb on - strand, within CA265_RS01165 at 295.486 kb on - strand at 295.502 kb on - strand at 295.512 kb on - strand at 295.535 kb on + strand at 295.535 kb on + strand at 295.536 kb on - strand at 295.568 kb on - strand at 295.604 kb on - strand at 295.672 kb on + strand, within CA265_RS01170 at 295.725 kb on + strand, within CA265_RS01170 at 295.725 kb on + strand, within CA265_RS01170 at 295.842 kb on + strand, within CA265_RS01170 at 295.842 kb on + strand, within CA265_RS01170 at 295.843 kb on - strand, within CA265_RS01170 at 295.862 kb on - strand, within CA265_RS01170 at 295.885 kb on + strand, within CA265_RS01170 at 295.923 kb on - strand, within CA265_RS01170 at 295.923 kb on - strand, within CA265_RS01170 at 295.952 kb on + strand, within CA265_RS01170 at 295.952 kb on + strand, within CA265_RS01170 at 296.150 kb on + strand, within CA265_RS01170 at 296.151 kb on - strand, within CA265_RS01170 at 296.151 kb on - strand, within CA265_RS01170 at 296.212 kb on + strand, within CA265_RS01170 at 296.237 kb on + strand, within CA265_RS01170 at 296.237 kb on + strand, within CA265_RS01170 at 296.285 kb on - strand, within CA265_RS01170 at 296.285 kb on - strand, within CA265_RS01170 at 296.303 kb on + strand, within CA265_RS01170 at 296.457 kb on + strand, within CA265_RS01170 at 296.511 kb on + strand, within CA265_RS01170 at 296.511 kb on + strand, within CA265_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 294,006 + CA265_RS01160 0.50 +0.0 294,007 - CA265_RS01160 0.50 -1.0 294,066 + CA265_RS01160 0.54 -0.6 294,068 + CA265_RS01160 0.54 +0.5 294,069 - CA265_RS01160 0.54 +0.1 294,100 + CA265_RS01160 0.56 -0.6 294,108 + CA265_RS01160 0.57 -0.0 294,108 + CA265_RS01160 0.57 +0.1 294,109 - CA265_RS01160 0.57 +0.2 294,109 - CA265_RS01160 0.57 -0.3 294,109 - CA265_RS01160 0.57 -1.5 294,109 - CA265_RS01160 0.57 +0.2 294,109 - CA265_RS01160 0.57 +0.3 294,169 - CA265_RS01160 0.61 -1.0 294,248 - CA265_RS01160 0.67 +0.1 294,358 + CA265_RS01160 0.74 -0.5 294,368 + CA265_RS01160 0.75 +0.1 294,395 + CA265_RS01160 0.77 -0.2 294,401 - CA265_RS01160 0.77 -0.8 294,438 + CA265_RS01160 0.80 -0.8 294,439 - CA265_RS01160 0.80 +0.8 294,439 - CA265_RS01160 0.80 -0.0 294,475 + CA265_RS01160 0.83 -0.1 294,484 + CA265_RS01160 0.83 +0.1 294,543 - CA265_RS01160 0.87 +0.8 294,567 - CA265_RS01160 0.89 -1.6 294,585 - -0.5 294,589 + +0.2 294,590 - -0.7 294,590 - -0.3 294,593 - -0.3 294,596 - +0.0 294,627 - +0.1 294,655 + -0.3 294,661 + -0.0 294,744 - -0.5 294,774 - -1.0 294,840 + -1.2 294,845 + -0.9 294,845 + -0.7 294,852 + +0.5 294,852 + -0.5 294,950 - -2.1 294,961 + +0.4 294,991 - +0.7 295,014 + -0.6 295,028 + +0.1 295,035 - -0.2 295,092 + +0.1 295,304 - CA265_RS01165 0.57 +2.4 295,436 - CA265_RS01165 0.81 +0.5 295,449 - CA265_RS01165 0.83 +0.5 295,486 - -0.1 295,502 - +0.1 295,512 - -0.4 295,535 + -0.7 295,535 + +0.7 295,536 - -1.8 295,568 - -0.3 295,604 - -0.0 295,672 + CA265_RS01170 0.11 +0.2 295,725 + CA265_RS01170 0.16 -1.9 295,725 + CA265_RS01170 0.16 +0.3 295,842 + CA265_RS01170 0.27 -1.4 295,842 + CA265_RS01170 0.27 -0.1 295,843 - CA265_RS01170 0.27 +0.3 295,862 - CA265_RS01170 0.29 +0.8 295,885 + CA265_RS01170 0.31 -0.8 295,923 - CA265_RS01170 0.34 -0.3 295,923 - CA265_RS01170 0.34 -0.4 295,952 + CA265_RS01170 0.37 -0.2 295,952 + CA265_RS01170 0.37 -0.2 296,150 + CA265_RS01170 0.55 -0.1 296,151 - CA265_RS01170 0.55 -1.0 296,151 - CA265_RS01170 0.55 +0.0 296,212 + CA265_RS01170 0.61 -0.5 296,237 + CA265_RS01170 0.63 -0.4 296,237 + CA265_RS01170 0.63 -0.6 296,285 - CA265_RS01170 0.67 +0.6 296,285 - CA265_RS01170 0.67 -0.3 296,303 + CA265_RS01170 0.69 +0.9 296,457 + CA265_RS01170 0.83 +0.8 296,511 + CA265_RS01170 0.88 +0.7 296,511 + CA265_RS01170 0.88 -0.4
Or see this region's nucleotide sequence