Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00795

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00790 and CA265_RS00795 are separated by 78 nucleotidesCA265_RS00795 and CA265_RS00800 overlap by 4 nucleotidesCA265_RS00800 and CA265_RS00805 are separated by 71 nucleotides CA265_RS00790: CA265_RS00790 - Crp/Fnr family transcriptional regulator, at 188,539 to 189,180 _RS00790 CA265_RS00795: CA265_RS00795 - HAD family hydrolase, at 189,259 to 189,954 _RS00795 CA265_RS00800: CA265_RS00800 - chloramphenicol acetyltransferase, at 189,951 to 190,595 _RS00800 CA265_RS00805: CA265_RS00805 - hypothetical protein, at 190,667 to 190,873 _RS00805 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 188.295 kb on - strandat 188.299 kb on - strandat 188.323 kb on - strandat 188.392 kb on - strandat 188.393 kb on + strandat 188.394 kb on - strandat 188.394 kb on - strandat 188.395 kb on + strandat 188.396 kb on - strandat 188.519 kb on + strandat 188.520 kb on - strandat 188.530 kb on + strandat 188.585 kb on - strandat 188.585 kb on - strandat 188.592 kb on + strandat 188.592 kb on + strandat 188.620 kb on - strand, within CA265_RS00790at 188.750 kb on - strand, within CA265_RS00790at 188.750 kb on - strand, within CA265_RS00790at 188.754 kb on + strand, within CA265_RS00790at 188.756 kb on + strand, within CA265_RS00790at 188.756 kb on + strand, within CA265_RS00790at 188.756 kb on + strand, within CA265_RS00790at 188.757 kb on - strand, within CA265_RS00790at 188.758 kb on + strand, within CA265_RS00790at 188.759 kb on - strand, within CA265_RS00790at 188.791 kb on + strand, within CA265_RS00790at 188.845 kb on - strand, within CA265_RS00790at 188.877 kb on + strand, within CA265_RS00790at 188.899 kb on + strand, within CA265_RS00790at 188.913 kb on + strand, within CA265_RS00790at 188.914 kb on - strand, within CA265_RS00790at 188.914 kb on - strand, within CA265_RS00790at 188.936 kb on - strand, within CA265_RS00790at 188.967 kb on + strand, within CA265_RS00790at 188.968 kb on - strand, within CA265_RS00790at 189.180 kb on + strandat 189.181 kb on - strandat 189.243 kb on + strandat 189.249 kb on - strandat 189.278 kb on + strandat 189.279 kb on - strandat 189.322 kb on + strandat 189.323 kb on - strandat 189.369 kb on + strand, within CA265_RS00795at 189.400 kb on + strand, within CA265_RS00795at 189.402 kb on + strand, within CA265_RS00795at 189.445 kb on - strand, within CA265_RS00795at 189.611 kb on - strand, within CA265_RS00795at 189.657 kb on - strand, within CA265_RS00795at 189.745 kb on - strand, within CA265_RS00795at 189.855 kb on + strand, within CA265_RS00795at 189.886 kb on - strandat 189.886 kb on - strandat 189.907 kb on + strandat 189.970 kb on + strandat 190.043 kb on - strand, within CA265_RS00800at 190.055 kb on + strand, within CA265_RS00800at 190.108 kb on - strand, within CA265_RS00800at 190.142 kb on - strand, within CA265_RS00800at 190.214 kb on + strand, within CA265_RS00800at 190.258 kb on - strand, within CA265_RS00800at 190.355 kb on - strand, within CA265_RS00800at 190.396 kb on + strand, within CA265_RS00800at 190.413 kb on + strand, within CA265_RS00800at 190.414 kb on - strand, within CA265_RS00800at 190.414 kb on - strand, within CA265_RS00800at 190.419 kb on + strand, within CA265_RS00800at 190.427 kb on + strand, within CA265_RS00800at 190.457 kb on + strand, within CA265_RS00800at 190.480 kb on + strand, within CA265_RS00800at 190.496 kb on - strand, within CA265_RS00800at 190.524 kb on + strand, within CA265_RS00800at 190.589 kb on + strandat 190.589 kb on + strandat 190.594 kb on - strandat 190.614 kb on + strandat 190.614 kb on + strandat 190.627 kb on + strandat 190.628 kb on - strandat 190.631 kb on + strandat 190.714 kb on - strand, within CA265_RS00805at 190.724 kb on + strand, within CA265_RS00805at 190.726 kb on + strand, within CA265_RS00805at 190.726 kb on + strand, within CA265_RS00805at 190.726 kb on + strand, within CA265_RS00805at 190.727 kb on - strand, within CA265_RS00805at 190.806 kb on - strand, within CA265_RS00805at 190.858 kb on + strandat 190.908 kb on + strandat 190.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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188,295 - -0.3
188,299 - +0.3
188,323 - +0.4
188,392 - -1.1
188,393 + -0.2
188,394 - +0.5
188,394 - +0.1
188,395 + -1.5
188,396 - +0.7
188,519 + -1.1
188,520 - -1.4
188,530 + +1.4
188,585 - -0.4
188,585 - +0.2
188,592 + +0.7
188,592 + -0.6
188,620 - CA265_RS00790 0.13 +0.1
188,750 - CA265_RS00790 0.33 +1.7
188,750 - CA265_RS00790 0.33 -0.1
188,754 + CA265_RS00790 0.33 +0.8
188,756 + CA265_RS00790 0.34 +0.6
188,756 + CA265_RS00790 0.34 +0.4
188,756 + CA265_RS00790 0.34 -0.9
188,757 - CA265_RS00790 0.34 +0.1
188,758 + CA265_RS00790 0.34 -0.3
188,759 - CA265_RS00790 0.34 -0.9
188,791 + CA265_RS00790 0.39 -0.0
188,845 - CA265_RS00790 0.48 -0.2
188,877 + CA265_RS00790 0.53 +0.2
188,899 + CA265_RS00790 0.56 -0.1
188,913 + CA265_RS00790 0.58 -1.1
188,914 - CA265_RS00790 0.58 -0.6
188,914 - CA265_RS00790 0.58 +0.1
188,936 - CA265_RS00790 0.62 -1.1
188,967 + CA265_RS00790 0.67 +0.2
188,968 - CA265_RS00790 0.67 +0.4
189,180 + +1.1
189,181 - -0.1
189,243 + -0.8
189,249 - -0.3
189,278 + -0.7
189,279 - -2.4
189,322 + -0.6
189,323 - -1.0
189,369 + CA265_RS00795 0.16 +0.6
189,400 + CA265_RS00795 0.20 +0.3
189,402 + CA265_RS00795 0.21 -0.5
189,445 - CA265_RS00795 0.27 -0.8
189,611 - CA265_RS00795 0.51 +0.6
189,657 - CA265_RS00795 0.57 +0.8
189,745 - CA265_RS00795 0.70 +0.1
189,855 + CA265_RS00795 0.86 +0.1
189,886 - +0.3
189,886 - -0.5
189,907 + -0.4
189,970 + +0.2
190,043 - CA265_RS00800 0.14 +0.5
190,055 + CA265_RS00800 0.16 +0.2
190,108 - CA265_RS00800 0.24 -0.1
190,142 - CA265_RS00800 0.30 -0.6
190,214 + CA265_RS00800 0.41 -0.1
190,258 - CA265_RS00800 0.48 -0.2
190,355 - CA265_RS00800 0.63 -0.8
190,396 + CA265_RS00800 0.69 -1.7
190,413 + CA265_RS00800 0.72 +0.4
190,414 - CA265_RS00800 0.72 +0.3
190,414 - CA265_RS00800 0.72 -0.2
190,419 + CA265_RS00800 0.73 -0.2
190,427 + CA265_RS00800 0.74 -0.8
190,457 + CA265_RS00800 0.78 +0.7
190,480 + CA265_RS00800 0.82 -0.0
190,496 - CA265_RS00800 0.84 +1.0
190,524 + CA265_RS00800 0.89 +1.9
190,589 + -0.1
190,589 + +0.7
190,594 - -0.9
190,614 + +0.1
190,614 + -0.2
190,627 + -0.7
190,628 - -1.1
190,631 + -0.2
190,714 - CA265_RS00805 0.23 -0.1
190,724 + CA265_RS00805 0.28 +0.1
190,726 + CA265_RS00805 0.29 -0.2
190,726 + CA265_RS00805 0.29 +0.2
190,726 + CA265_RS00805 0.29 +0.0
190,727 - CA265_RS00805 0.29 +0.9
190,806 - CA265_RS00805 0.67 +2.0
190,858 + -0.5
190,908 + -0.0
190,909 - -0.3

Or see this region's nucleotide sequence