Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00240 and CA265_RS00245 are separated by 78 nucleotides CA265_RS00245 and CA265_RS00250 are separated by 203 nucleotides CA265_RS00250 and CA265_RS00255 are separated by 158 nucleotides
CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003
_RS00240
CA265_RS00245: CA265_RS00245 - hypothetical protein, at 59,082 to 59,444
_RS00245
CA265_RS00250: CA265_RS00250 - oxidoreductase, at 59,648 to 60,442
_RS00250
CA265_RS00255: CA265_RS00255 - alpha/beta hydrolase, at 60,601 to 61,422
_RS00255
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 58.660 kb on + strand, within CA265_RS00240 at 58.689 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.833 kb on - strand, within CA265_RS00240 at 58.855 kb on + strand, within CA265_RS00240 at 58.913 kb on + strand at 59.010 kb on - strand at 59.020 kb on + strand at 59.020 kb on + strand at 59.126 kb on + strand, within CA265_RS00245 at 59.135 kb on + strand, within CA265_RS00245 at 59.186 kb on + strand, within CA265_RS00245 at 59.187 kb on - strand, within CA265_RS00245 at 59.227 kb on + strand, within CA265_RS00245 at 59.240 kb on - strand, within CA265_RS00245 at 59.240 kb on - strand, within CA265_RS00245 at 59.258 kb on + strand, within CA265_RS00245 at 59.285 kb on - strand, within CA265_RS00245 at 59.337 kb on + strand, within CA265_RS00245 at 59.349 kb on - strand, within CA265_RS00245 at 59.374 kb on + strand, within CA265_RS00245 at 59.443 kb on - strand at 59.443 kb on - strand at 59.468 kb on - strand at 59.468 kb on - strand at 59.480 kb on + strand at 59.520 kb on - strand at 59.594 kb on - strand at 59.655 kb on + strand at 59.656 kb on - strand at 59.656 kb on - strand at 59.669 kb on - strand at 59.681 kb on - strand at 59.692 kb on + strand at 59.748 kb on + strand, within CA265_RS00250 at 59.779 kb on - strand, within CA265_RS00250 at 59.779 kb on - strand, within CA265_RS00250 at 59.912 kb on - strand, within CA265_RS00250 at 60.107 kb on + strand, within CA265_RS00250 at 60.118 kb on + strand, within CA265_RS00250 at 60.119 kb on - strand, within CA265_RS00250 at 60.276 kb on + strand, within CA265_RS00250 at 60.277 kb on - strand, within CA265_RS00250 at 60.292 kb on + strand, within CA265_RS00250 at 60.307 kb on + strand, within CA265_RS00250 at 60.365 kb on + strand at 60.370 kb on - strand at 60.370 kb on - strand at 60.411 kb on + strand at 60.412 kb on - strand at 60.423 kb on + strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.509 kb on + strand at 60.510 kb on - strand at 60.585 kb on - strand at 60.606 kb on + strand at 60.607 kb on - strand at 60.666 kb on + strand at 60.693 kb on - strand, within CA265_RS00255 at 60.743 kb on - strand, within CA265_RS00255 at 60.818 kb on - strand, within CA265_RS00255 at 60.818 kb on - strand, within CA265_RS00255 at 60.869 kb on + strand, within CA265_RS00255 at 60.870 kb on - strand, within CA265_RS00255 at 60.910 kb on + strand, within CA265_RS00255 at 60.911 kb on - strand, within CA265_RS00255 at 60.957 kb on + strand, within CA265_RS00255 at 60.975 kb on - strand at 61.020 kb on - strand, within CA265_RS00255 at 61.032 kb on - strand, within CA265_RS00255 at 61.042 kb on - strand, within CA265_RS00255 at 61.042 kb on - strand, within CA265_RS00255 at 61.097 kb on - strand, within CA265_RS00255 at 61.098 kb on + strand, within CA265_RS00255 at 61.098 kb on + strand, within CA265_RS00255 at 61.099 kb on - strand, within CA265_RS00255 at 61.181 kb on - strand, within CA265_RS00255 at 61.181 kb on - strand, within CA265_RS00255 at 61.191 kb on + strand, within CA265_RS00255 at 61.228 kb on - strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.294 kb on - strand, within CA265_RS00255 at 61.389 kb on - strand at 61.389 kb on - strand at 61.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 58,660 + CA265_RS00240 0.70 +0.1 58,689 + CA265_RS00240 0.72 -1.2 58,716 + CA265_RS00240 0.75 -0.4 58,716 + CA265_RS00240 0.75 +0.3 58,833 - CA265_RS00240 0.85 -1.3 58,855 + CA265_RS00240 0.87 +0.2 58,913 + -0.0 59,010 - +0.2 59,020 + -1.0 59,020 + -1.3 59,126 + CA265_RS00245 0.12 +0.5 59,135 + CA265_RS00245 0.15 +0.0 59,186 + CA265_RS00245 0.29 +0.4 59,187 - CA265_RS00245 0.29 -0.5 59,227 + CA265_RS00245 0.40 -0.1 59,240 - CA265_RS00245 0.44 -0.7 59,240 - CA265_RS00245 0.44 -0.9 59,258 + CA265_RS00245 0.48 +0.5 59,285 - CA265_RS00245 0.56 +0.4 59,337 + CA265_RS00245 0.70 +0.3 59,349 - CA265_RS00245 0.74 -0.0 59,374 + CA265_RS00245 0.80 +0.6 59,443 - -0.2 59,443 - +0.9 59,468 - +0.5 59,468 - +0.7 59,480 + -0.0 59,520 - +0.5 59,594 - -0.2 59,655 + +0.2 59,656 - +0.1 59,656 - +0.4 59,669 - +0.3 59,681 - +1.0 59,692 + -0.6 59,748 + CA265_RS00250 0.13 -0.4 59,779 - CA265_RS00250 0.16 -0.4 59,779 - CA265_RS00250 0.16 +0.3 59,912 - CA265_RS00250 0.33 +0.2 60,107 + CA265_RS00250 0.58 -0.4 60,118 + CA265_RS00250 0.59 -1.9 60,119 - CA265_RS00250 0.59 +1.3 60,276 + CA265_RS00250 0.79 -0.1 60,277 - CA265_RS00250 0.79 -0.5 60,292 + CA265_RS00250 0.81 -0.6 60,307 + CA265_RS00250 0.83 -1.1 60,365 + -0.1 60,370 - +0.1 60,370 - -1.3 60,411 + +0.2 60,412 - +0.1 60,423 + -1.0 60,470 - +0.8 60,470 - -0.2 60,470 - -0.4 60,509 + -0.8 60,510 - +0.2 60,585 - +1.1 60,606 + +1.3 60,607 - +0.2 60,666 + -1.7 60,693 - CA265_RS00255 0.11 +0.4 60,743 - CA265_RS00255 0.17 +0.3 60,818 - CA265_RS00255 0.26 -0.4 60,818 - CA265_RS00255 0.26 -0.3 60,869 + CA265_RS00255 0.33 -1.3 60,870 - CA265_RS00255 0.33 -1.3 60,910 + CA265_RS00255 0.38 +1.3 60,911 - CA265_RS00255 0.38 -0.4 60,957 + CA265_RS00255 0.43 -0.7 60,975 - +1.1 61,020 - CA265_RS00255 0.51 +0.3 61,032 - CA265_RS00255 0.52 -0.4 61,042 - CA265_RS00255 0.54 +0.1 61,042 - CA265_RS00255 0.54 -0.1 61,097 - CA265_RS00255 0.60 -0.5 61,098 + CA265_RS00255 0.60 -0.1 61,098 + CA265_RS00255 0.60 +0.7 61,099 - CA265_RS00255 0.61 -0.4 61,181 - CA265_RS00255 0.71 +0.1 61,181 - CA265_RS00255 0.71 +0.2 61,191 + CA265_RS00255 0.72 +0.1 61,228 - CA265_RS00255 0.76 -0.7 61,235 + CA265_RS00255 0.77 -1.1 61,235 + CA265_RS00255 0.77 -0.6 61,235 + CA265_RS00255 0.77 +0.4 61,294 - CA265_RS00255 0.84 -0.4 61,389 - -1.1 61,389 - +0.2 61,393 - -0.1
Or see this region's nucleotide sequence