Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_921 and Ac3H11_922 are separated by 321 nucleotides Ac3H11_922 and Ac3H11_923 are separated by 9 nucleotides Ac3H11_923 and Ac3H11_924 are separated by 144 nucleotides Ac3H11_924 and Ac3H11_925 are separated by 18 nucleotides
Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647
_921
Ac3H11_922 - Mobile element protein, at 36,969 to 37,949
_922
Ac3H11_923 - hypothetical protein, at 37,959 to 38,246
_923
Ac3H11_924 - hypothetical protein, at 38,391 to 38,732
_924
Ac3H11_925 - Tricarboxylate transport protein TctC, at 38,751 to 39,764
_925
Position (kb) 36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 36.139 kb on + strand, within Ac3H11_921 at 36.139 kb on + strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.152 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.269 kb on - strand, within Ac3H11_921 at 36.738 kb on - strand at 36.738 kb on - strand at 36.765 kb on - strand at 36.774 kb on - strand at 36.784 kb on + strand at 36.797 kb on + strand at 36.901 kb on - strand at 36.901 kb on - strand at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.132 kb on + strand, within Ac3H11_922 at 37.132 kb on + strand, within Ac3H11_922 at 37.133 kb on - strand, within Ac3H11_922 at 37.133 kb on - strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.604 kb on - strand, within Ac3H11_922 at 37.663 kb on + strand, within Ac3H11_922 at 37.664 kb on - strand, within Ac3H11_922 at 37.664 kb on - strand, within Ac3H11_922 at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.984 kb on + strand at 37.984 kb on + strand at 37.985 kb on - strand at 38.286 kb on + strand at 38.286 kb on + strand at 38.286 kb on + strand at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 36,139 + Ac3H11_921 0.78 -1.4 36,139 + Ac3H11_921 0.78 +0.6 36,140 - Ac3H11_921 0.78 +0.3 36,140 - Ac3H11_921 0.78 +1.9 36,140 - Ac3H11_921 0.78 +0.9 36,152 - Ac3H11_921 0.79 -0.3 36,206 - Ac3H11_921 0.81 -0.0 36,206 - Ac3H11_921 0.81 +0.5 36,206 - Ac3H11_921 0.81 +0.7 36,269 - Ac3H11_921 0.84 +0.6 36,738 - -0.3 36,738 - -0.9 36,765 - +0.1 36,774 - +1.0 36,784 + +0.6 36,797 + -3.3 36,901 - -0.3 36,901 - +1.0 37,108 + Ac3H11_922 0.14 -2.7 37,108 + Ac3H11_922 0.14 +0.4 37,108 + Ac3H11_922 0.14 +1.0 37,108 + Ac3H11_922 0.14 -1.7 37,108 + Ac3H11_922 0.14 +0.2 37,108 + Ac3H11_922 0.14 +0.3 37,108 + Ac3H11_922 0.14 -0.7 37,108 + Ac3H11_922 0.14 -0.0 37,108 + Ac3H11_922 0.14 +0.6 37,108 + Ac3H11_922 0.14 +1.2 37,108 + Ac3H11_922 0.14 +1.6 37,108 + Ac3H11_922 0.14 +0.8 37,108 + Ac3H11_922 0.14 -2.6 37,109 - Ac3H11_922 0.14 -0.4 37,109 - Ac3H11_922 0.14 +0.5 37,109 - Ac3H11_922 0.14 +0.9 37,109 - Ac3H11_922 0.14 +1.1 37,109 - Ac3H11_922 0.14 +0.2 37,109 - Ac3H11_922 0.14 -0.4 37,109 - Ac3H11_922 0.14 +0.8 37,109 - Ac3H11_922 0.14 -2.5 37,109 - Ac3H11_922 0.14 +1.2 37,109 - Ac3H11_922 0.14 -1.4 37,132 + Ac3H11_922 0.17 -0.4 37,132 + Ac3H11_922 0.17 -0.4 37,133 - Ac3H11_922 0.17 -1.4 37,133 - Ac3H11_922 0.17 -0.6 37,159 + Ac3H11_922 0.19 -1.4 37,159 + Ac3H11_922 0.19 +0.5 37,159 + Ac3H11_922 0.19 +0.5 37,159 + Ac3H11_922 0.19 +1.6 37,159 + Ac3H11_922 0.19 +1.2 37,159 + Ac3H11_922 0.19 -0.3 37,159 + Ac3H11_922 0.19 +1.4 37,159 + Ac3H11_922 0.19 -0.3 37,159 + Ac3H11_922 0.19 -0.5 37,159 + Ac3H11_922 0.19 +0.9 37,159 + Ac3H11_922 0.19 -2.6 37,159 + Ac3H11_922 0.19 -0.6 37,159 + Ac3H11_922 0.19 -1.7 37,160 - Ac3H11_922 0.19 +0.5 37,160 - Ac3H11_922 0.19 +0.7 37,160 - Ac3H11_922 0.19 +0.5 37,160 - Ac3H11_922 0.19 +0.9 37,160 - Ac3H11_922 0.19 +0.7 37,160 - Ac3H11_922 0.19 -1.3 37,160 - Ac3H11_922 0.19 +0.8 37,160 - Ac3H11_922 0.19 -3.4 37,160 - Ac3H11_922 0.19 -1.1 37,160 - Ac3H11_922 0.19 -1.0 37,160 - Ac3H11_922 0.19 -1.7 37,160 - Ac3H11_922 0.19 -1.1 37,160 - Ac3H11_922 0.19 -0.2 37,160 - Ac3H11_922 0.19 +1.1 37,160 - Ac3H11_922 0.19 +1.8 37,173 + Ac3H11_922 0.21 -0.6 37,173 + Ac3H11_922 0.21 -1.9 37,173 + Ac3H11_922 0.21 -0.0 37,173 + Ac3H11_922 0.21 +0.8 37,173 + Ac3H11_922 0.21 +0.5 37,174 - Ac3H11_922 0.21 -0.3 37,174 - Ac3H11_922 0.21 +1.4 37,174 - Ac3H11_922 0.21 -1.5 37,174 - Ac3H11_922 0.21 -0.5 37,174 - Ac3H11_922 0.21 +2.3 37,372 + Ac3H11_922 0.41 -0.6 37,372 + Ac3H11_922 0.41 -0.8 37,372 + Ac3H11_922 0.41 -0.3 37,372 + Ac3H11_922 0.41 +0.2 37,372 + Ac3H11_922 0.41 +1.4 37,372 + Ac3H11_922 0.41 -2.4 37,372 + Ac3H11_922 0.41 -0.4 37,372 + Ac3H11_922 0.41 -1.0 37,372 + Ac3H11_922 0.41 -0.9 37,372 + Ac3H11_922 0.41 -0.4 37,372 + Ac3H11_922 0.41 -1.7 37,372 + Ac3H11_922 0.41 -0.6 37,373 - Ac3H11_922 0.41 -2.0 37,373 - Ac3H11_922 0.41 +1.0 37,373 - Ac3H11_922 0.41 +0.4 37,373 - Ac3H11_922 0.41 -2.1 37,373 - Ac3H11_922 0.41 +0.5 37,373 - Ac3H11_922 0.41 +0.5 37,373 - Ac3H11_922 0.41 -0.0 37,373 - Ac3H11_922 0.41 -0.3 37,373 - Ac3H11_922 0.41 +0.2 37,373 - Ac3H11_922 0.41 -3.3 37,373 - Ac3H11_922 0.41 -0.3 37,373 - Ac3H11_922 0.41 -1.0 37,404 + Ac3H11_922 0.44 -0.2 37,404 + Ac3H11_922 0.44 -0.6 37,404 + Ac3H11_922 0.44 -0.4 37,404 + Ac3H11_922 0.44 +0.1 37,405 - Ac3H11_922 0.44 -1.0 37,405 - Ac3H11_922 0.44 +3.9 37,405 - Ac3H11_922 0.44 -1.2 37,405 - Ac3H11_922 0.44 -0.5 37,405 - Ac3H11_922 0.44 +0.6 37,603 + Ac3H11_922 0.65 +2.6 37,603 + Ac3H11_922 0.65 -1.6 37,603 + Ac3H11_922 0.65 +1.6 37,603 + Ac3H11_922 0.65 +1.0 37,603 + Ac3H11_922 0.65 -0.8 37,603 + Ac3H11_922 0.65 -0.4 37,604 - Ac3H11_922 0.65 -1.4 37,663 + Ac3H11_922 0.71 -0.9 37,664 - Ac3H11_922 0.71 +0.1 37,664 - Ac3H11_922 0.71 -0.3 37,966 + +1.6 37,966 + +1.0 37,966 + -2.0 37,966 + +0.2 37,966 + -1.4 37,966 + -0.4 37,966 + -0.3 37,966 + +0.3 37,966 + +1.6 37,966 + -2.1 37,966 + +0.3 37,966 + +1.0 37,966 + +0.6 37,966 + -0.6 37,966 + +2.6 37,966 + +1.3 37,966 + +0.6 37,966 + -1.6 37,966 + -1.3 37,966 + +1.4 37,966 + -0.1 37,966 + +0.8 37,966 + -0.6 37,966 + +1.3 37,966 + -0.1 37,966 + +0.4 37,966 + -2.0 37,966 + +0.5 37,967 - +1.6 37,967 - -3.9 37,967 - -0.9 37,967 - -1.7 37,967 - +1.0 37,967 - -0.1 37,967 - -2.1 37,967 - +1.6 37,967 - -1.0 37,967 - -1.9 37,967 - -0.3 37,967 - +1.2 37,967 - -2.1 37,967 - +2.2 37,967 - -1.6 37,967 - +1.3 37,967 - +2.1 37,967 - +1.6 37,967 - -0.0 37,984 + +1.4 37,984 + -1.0 37,985 - -0.5 38,286 + +1.4 38,286 + +0.9 38,286 + -0.7 38,691 + Ac3H11_924 0.88 +2.3 38,691 + Ac3H11_924 0.88 +1.9 38,691 + Ac3H11_924 0.88 +0.8 38,691 + Ac3H11_924 0.88 +2.2 38,691 + Ac3H11_924 0.88 -0.4 38,691 + Ac3H11_924 0.88 +0.9 38,692 - Ac3H11_924 0.88 -0.8 38,692 - Ac3H11_924 0.88 -0.7 38,692 - Ac3H11_924 0.88 -1.0 38,692 - Ac3H11_924 0.88 -0.1
Or see this region's nucleotide sequence