Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_903 and Ac3H11_904 are separated by 183 nucleotides Ac3H11_904 and Ac3H11_905 are separated by 90 nucleotides
Ac3H11_903 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 14,804 to 17,833
_903
Ac3H11_904 - Chemotactic transducer-related protein, at 18,017 to 19,645
_904
Ac3H11_905 - Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup, at 19,736 to 20,737
_905
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.226 kb on + strand, within Ac3H11_903 at 17.226 kb on + strand, within Ac3H11_903 at 17.293 kb on - strand, within Ac3H11_903 at 17.349 kb on + strand, within Ac3H11_903 at 17.349 kb on + strand, within Ac3H11_903 at 17.350 kb on - strand, within Ac3H11_903 at 17.350 kb on - strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.383 kb on - strand, within Ac3H11_903 at 17.383 kb on - strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.437 kb on - strand, within Ac3H11_903 at 17.496 kb on + strand, within Ac3H11_903 at 17.496 kb on + strand, within Ac3H11_903 at 17.497 kb on - strand, within Ac3H11_903 at 17.668 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.839 kb on + strand at 17.840 kb on - strand at 18.019 kb on - strand at 18.019 kb on - strand at 18.019 kb on - strand at 18.090 kb on + strand at 18.090 kb on + strand at 18.090 kb on + strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.199 kb on - strand, within Ac3H11_904 at 18.199 kb on - strand, within Ac3H11_904 at 18.199 kb on - strand, within Ac3H11_904 at 18.333 kb on + strand, within Ac3H11_904 at 18.334 kb on - strand, within Ac3H11_904 at 18.405 kb on + strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.861 kb on + strand, within Ac3H11_904 at 18.937 kb on + strand, within Ac3H11_904 at 18.937 kb on + strand, within Ac3H11_904 at 18.937 kb on + strand, within Ac3H11_904 at 18.937 kb on + strand, within Ac3H11_904 at 18.937 kb on + strand, within Ac3H11_904 at 18.938 kb on - strand, within Ac3H11_904 at 18.938 kb on - strand, within Ac3H11_904 at 18.975 kb on + strand, within Ac3H11_904 at 19.290 kb on + strand, within Ac3H11_904 at 19.291 kb on - strand, within Ac3H11_904 at 19.406 kb on - strand, within Ac3H11_904 at 19.406 kb on - strand, within Ac3H11_904 at 19.491 kb on + strand at 19.492 kb on - strand at 19.492 kb on - strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.646 kb on - strand at 19.646 kb on - strand at 19.701 kb on + strand at 19.701 kb on + strand at 19.701 kb on + strand at 19.701 kb on + strand at 19.701 kb on + strand at 20.001 kb on - strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.081 kb on + strand, within Ac3H11_905 at 20.082 kb on - strand, within Ac3H11_905 at 20.082 kb on - strand, within Ac3H11_905 at 20.082 kb on - strand, within Ac3H11_905 at 20.082 kb on - strand, within Ac3H11_905 at 20.082 kb on - strand, within Ac3H11_905 at 20.153 kb on + strand, within Ac3H11_905 at 20.154 kb on - strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.354 kb on + strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.355 kb on - strand, within Ac3H11_905 at 20.381 kb on + strand, within Ac3H11_905 at 20.381 kb on + strand, within Ac3H11_905 at 20.381 kb on + strand, within Ac3H11_905 at 20.381 kb on + strand, within Ac3H11_905 at 20.382 kb on - strand, within Ac3H11_905 at 20.382 kb on - strand, within Ac3H11_905 at 20.540 kb on + strand, within Ac3H11_905 at 20.540 kb on + strand, within Ac3H11_905 at 20.540 kb on + strand, within Ac3H11_905 at 20.541 kb on - strand, within Ac3H11_905 at 20.541 kb on - strand, within Ac3H11_905 at 20.541 kb on - strand, within Ac3H11_905 at 20.541 kb on - strand, within Ac3H11_905 at 20.541 kb on - strand, within Ac3H11_905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 17,226 + Ac3H11_903 0.80 +0.3 17,226 + Ac3H11_903 0.80 -0.5 17,293 - Ac3H11_903 0.82 +1.9 17,349 + Ac3H11_903 0.84 +0.6 17,349 + Ac3H11_903 0.84 -1.5 17,350 - Ac3H11_903 0.84 -1.8 17,350 - Ac3H11_903 0.84 -1.3 17,382 + Ac3H11_903 0.85 +0.3 17,382 + Ac3H11_903 0.85 +0.9 17,382 + Ac3H11_903 0.85 +2.0 17,382 + Ac3H11_903 0.85 +0.1 17,383 - Ac3H11_903 0.85 -0.2 17,383 - Ac3H11_903 0.85 -0.0 17,436 + Ac3H11_903 0.87 -0.6 17,436 + Ac3H11_903 0.87 +0.0 17,436 + Ac3H11_903 0.87 -0.8 17,437 - Ac3H11_903 0.87 +0.4 17,496 + Ac3H11_903 0.89 -1.4 17,496 + Ac3H11_903 0.89 +2.6 17,497 - Ac3H11_903 0.89 +0.2 17,668 + -0.0 17,760 + +1.6 17,760 + -0.4 17,760 + -3.2 17,760 + -0.3 17,839 + -1.0 17,840 - -1.4 18,019 - -0.1 18,019 - +2.5 18,019 - +1.9 18,090 + +0.6 18,090 + +2.3 18,090 + +0.6 18,091 - +0.6 18,091 - +1.4 18,091 - +1.7 18,091 - +1.4 18,199 - Ac3H11_904 0.11 -0.4 18,199 - Ac3H11_904 0.11 +0.4 18,199 - Ac3H11_904 0.11 -1.2 18,333 + Ac3H11_904 0.19 +1.7 18,334 - Ac3H11_904 0.19 -0.4 18,405 + Ac3H11_904 0.24 +0.6 18,406 - Ac3H11_904 0.24 -0.6 18,406 - Ac3H11_904 0.24 -1.9 18,406 - Ac3H11_904 0.24 -1.1 18,406 - Ac3H11_904 0.24 +0.5 18,406 - Ac3H11_904 0.24 -0.7 18,406 - Ac3H11_904 0.24 +1.9 18,768 + Ac3H11_904 0.46 -2.3 18,768 + Ac3H11_904 0.46 -1.7 18,768 + Ac3H11_904 0.46 -0.6 18,768 + Ac3H11_904 0.46 -0.0 18,768 + Ac3H11_904 0.46 +1.6 18,768 + Ac3H11_904 0.46 -0.7 18,768 + Ac3H11_904 0.46 +0.7 18,769 - Ac3H11_904 0.46 -0.0 18,769 - Ac3H11_904 0.46 -0.2 18,769 - Ac3H11_904 0.46 -4.3 18,769 - Ac3H11_904 0.46 -0.9 18,769 - Ac3H11_904 0.46 +0.3 18,861 + Ac3H11_904 0.52 +1.9 18,937 + Ac3H11_904 0.56 +0.8 18,937 + Ac3H11_904 0.56 +0.3 18,937 + Ac3H11_904 0.56 +0.7 18,937 + Ac3H11_904 0.56 -0.2 18,937 + Ac3H11_904 0.56 +2.6 18,938 - Ac3H11_904 0.57 +0.6 18,938 - Ac3H11_904 0.57 -1.2 18,975 + Ac3H11_904 0.59 -2.2 19,290 + Ac3H11_904 0.78 +0.1 19,291 - Ac3H11_904 0.78 +0.1 19,406 - Ac3H11_904 0.85 -0.7 19,406 - Ac3H11_904 0.85 -1.0 19,491 + -0.1 19,492 - +1.2 19,492 - +1.7 19,645 + +0.1 19,645 + +1.4 19,645 + +1.0 19,646 - -0.9 19,646 - +0.4 19,701 + +0.8 19,701 + -1.3 19,701 + -1.0 19,701 + -0.1 19,701 + -0.0 20,001 - Ac3H11_905 0.26 +0.7 20,081 + Ac3H11_905 0.34 +0.6 20,081 + Ac3H11_905 0.34 +0.6 20,081 + Ac3H11_905 0.34 +0.7 20,081 + Ac3H11_905 0.34 -0.7 20,081 + Ac3H11_905 0.34 +0.2 20,081 + Ac3H11_905 0.34 +0.1 20,081 + Ac3H11_905 0.34 -1.9 20,082 - Ac3H11_905 0.35 -1.0 20,082 - Ac3H11_905 0.35 -1.7 20,082 - Ac3H11_905 0.35 -1.5 20,082 - Ac3H11_905 0.35 +0.3 20,082 - Ac3H11_905 0.35 -0.5 20,153 + Ac3H11_905 0.42 -0.3 20,154 - Ac3H11_905 0.42 -0.4 20,354 + Ac3H11_905 0.62 +1.8 20,354 + Ac3H11_905 0.62 +0.1 20,354 + Ac3H11_905 0.62 +0.0 20,354 + Ac3H11_905 0.62 -0.7 20,354 + Ac3H11_905 0.62 -0.6 20,354 + Ac3H11_905 0.62 +0.0 20,354 + Ac3H11_905 0.62 -1.2 20,354 + Ac3H11_905 0.62 +1.2 20,354 + Ac3H11_905 0.62 +1.4 20,354 + Ac3H11_905 0.62 +1.1 20,354 + Ac3H11_905 0.62 +0.2 20,355 - Ac3H11_905 0.62 -0.0 20,355 - Ac3H11_905 0.62 +1.5 20,355 - Ac3H11_905 0.62 +0.6 20,355 - Ac3H11_905 0.62 -2.3 20,355 - Ac3H11_905 0.62 +0.8 20,355 - Ac3H11_905 0.62 -0.3 20,355 - Ac3H11_905 0.62 -0.5 20,355 - Ac3H11_905 0.62 -1.0 20,381 + Ac3H11_905 0.64 +1.2 20,381 + Ac3H11_905 0.64 +0.6 20,381 + Ac3H11_905 0.64 +1.4 20,381 + Ac3H11_905 0.64 +0.0 20,382 - Ac3H11_905 0.64 -0.2 20,382 - Ac3H11_905 0.64 +0.6 20,540 + Ac3H11_905 0.80 +0.9 20,540 + Ac3H11_905 0.80 +1.2 20,540 + Ac3H11_905 0.80 +0.7 20,541 - Ac3H11_905 0.80 +0.0 20,541 - Ac3H11_905 0.80 +0.7 20,541 - Ac3H11_905 0.80 +2.6 20,541 - Ac3H11_905 0.80 +2.0 20,541 - Ac3H11_905 0.80 +0.4
Or see this region's nucleotide sequence