Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_517

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_516 and Ac3H11_517 are separated by 41 nucleotidesAc3H11_517 and Ac3H11_518 are separated by 74 nucleotidesAc3H11_518 and Ac3H11_519 are separated by 113 nucleotides Ac3H11_516 - COGs COG3146, at 218,163 to 219,503 _516 Ac3H11_517 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 219,545 to 221,203 _517 Ac3H11_518 - Nitrogen regulatory protein P-II, at 221,278 to 221,616 _518 Ac3H11_519 - Lysine decarboxylase family, at 221,730 to 222,323 _519 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 218.641 kb on + strand, within Ac3H11_516at 218.653 kb on + strand, within Ac3H11_516at 219.154 kb on + strand, within Ac3H11_516at 219.154 kb on + strand, within Ac3H11_516at 219.157 kb on + strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.178 kb on + strand, within Ac3H11_516at 219.178 kb on + strand, within Ac3H11_516at 219.179 kb on - strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.218 kb on - strand, within Ac3H11_516at 219.235 kb on + strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.344 kb on - strand, within Ac3H11_516at 219.344 kb on - strand, within Ac3H11_516at 219.411 kb on + strandat 219.411 kb on + strandat 219.638 kb on + strandat 219.639 kb on - strandat 219.689 kb on + strandat 219.893 kb on + strand, within Ac3H11_517at 219.893 kb on + strand, within Ac3H11_517at 219.893 kb on + strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.918 kb on - strand, within Ac3H11_517at 219.942 kb on - strand, within Ac3H11_517at 219.942 kb on - strand, within Ac3H11_517at 220.167 kb on - strand, within Ac3H11_517at 220.167 kb on - strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.473 kb on + strand, within Ac3H11_517at 220.473 kb on + strand, within Ac3H11_517at 220.474 kb on - strand, within Ac3H11_517at 220.474 kb on - strand, within Ac3H11_517at 220.523 kb on + strand, within Ac3H11_517at 220.523 kb on + strand, within Ac3H11_517at 220.524 kb on - strand, within Ac3H11_517at 220.584 kb on - strand, within Ac3H11_517at 220.584 kb on - strand, within Ac3H11_517at 220.779 kb on - strand, within Ac3H11_517at 220.790 kb on + strand, within Ac3H11_517at 220.791 kb on - strand, within Ac3H11_517at 220.791 kb on - strand, within Ac3H11_517at 220.791 kb on - strand, within Ac3H11_517at 220.883 kb on + strand, within Ac3H11_517at 220.884 kb on - strand, within Ac3H11_517at 221.012 kb on + strand, within Ac3H11_517at 221.012 kb on + strand, within Ac3H11_517at 221.012 kb on + strand, within Ac3H11_517at 221.013 kb on - strand, within Ac3H11_517at 221.013 kb on - strand, within Ac3H11_517at 221.013 kb on - strand, within Ac3H11_517at 221.034 kb on + strand, within Ac3H11_517at 221.034 kb on + strand, within Ac3H11_517at 221.035 kb on - strand, within Ac3H11_517at 221.035 kb on - strand, within Ac3H11_517at 221.108 kb on + strandat 221.108 kb on + strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.137 kb on + strandat 221.137 kb on + strandat 221.138 kb on - strandat 221.138 kb on - strandat 221.138 kb on - strandat 221.138 kb on - strandat 221.138 kb on - strandat 221.179 kb on + strandat 221.179 kb on + strandat 221.179 kb on + strandat 221.179 kb on + strandat 221.188 kb on + strandat 221.188 kb on + strandat 221.189 kb on - strandat 221.189 kb on - strandat 221.249 kb on + strandat 221.428 kb on + strand, within Ac3H11_518at 221.428 kb on + strand, within Ac3H11_518at 221.428 kb on + strand, within Ac3H11_518at 221.428 kb on + strand, within Ac3H11_518at 221.428 kb on + strand, within Ac3H11_518at 221.428 kb on + strand, within Ac3H11_518at 221.429 kb on - strand, within Ac3H11_518at 221.429 kb on - strand, within Ac3H11_518at 221.429 kb on - strand, within Ac3H11_518at 221.896 kb on + strand, within Ac3H11_519at 221.896 kb on + strand, within Ac3H11_519at 221.896 kb on + strand, within Ac3H11_519at 221.896 kb on + strand, within Ac3H11_519at 221.897 kb on - strand, within Ac3H11_519at 221.897 kb on - strand, within Ac3H11_519at 221.897 kb on - strand, within Ac3H11_519at 221.899 kb on + strand, within Ac3H11_519at 221.900 kb on - strand, within Ac3H11_519at 221.938 kb on + strand, within Ac3H11_519at 221.939 kb on - strand, within Ac3H11_519at 222.200 kb on - strand, within Ac3H11_519at 222.200 kb on - strand, within Ac3H11_519

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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218,641 + Ac3H11_516 0.36 +0.0
218,653 + Ac3H11_516 0.37 -2.3
219,154 + Ac3H11_516 0.74 +0.2
219,154 + Ac3H11_516 0.74 +0.2
219,157 + Ac3H11_516 0.74 +1.1
219,158 - Ac3H11_516 0.74 -0.5
219,158 - Ac3H11_516 0.74 +0.2
219,158 - Ac3H11_516 0.74 -0.1
219,178 + Ac3H11_516 0.76 +1.3
219,178 + Ac3H11_516 0.76 +0.7
219,179 - Ac3H11_516 0.76 +0.9
219,208 + Ac3H11_516 0.78 +0.6
219,208 + Ac3H11_516 0.78 +0.7
219,208 + Ac3H11_516 0.78 +1.2
219,209 - Ac3H11_516 0.78 -1.0
219,209 - Ac3H11_516 0.78 -1.9
219,209 - Ac3H11_516 0.78 +0.4
219,218 - Ac3H11_516 0.79 -0.4
219,235 + Ac3H11_516 0.80 +1.6
219,236 - Ac3H11_516 0.80 -2.5
219,236 - Ac3H11_516 0.80 -0.3
219,236 - Ac3H11_516 0.80 -0.6
219,236 - Ac3H11_516 0.80 +2.4
219,343 + Ac3H11_516 0.88 +1.4
219,343 + Ac3H11_516 0.88 +1.3
219,343 + Ac3H11_516 0.88 -2.7
219,343 + Ac3H11_516 0.88 +0.4
219,344 - Ac3H11_516 0.88 +0.1
219,344 - Ac3H11_516 0.88 -1.4
219,411 + -0.9
219,411 + +2.1
219,638 + -2.8
219,639 - -2.1
219,689 + +0.2
219,893 + Ac3H11_517 0.21 -0.0
219,893 + Ac3H11_517 0.21 -1.6
219,893 + Ac3H11_517 0.21 -2.7
219,894 - Ac3H11_517 0.21 -0.4
219,894 - Ac3H11_517 0.21 +0.6
219,894 - Ac3H11_517 0.21 -1.8
219,894 - Ac3H11_517 0.21 -0.3
219,894 - Ac3H11_517 0.21 -0.8
219,918 - Ac3H11_517 0.22 -3.1
219,942 - Ac3H11_517 0.24 -2.0
219,942 - Ac3H11_517 0.24 -2.5
220,167 - Ac3H11_517 0.37 -0.8
220,167 - Ac3H11_517 0.37 -1.4
220,391 + Ac3H11_517 0.51 -1.9
220,391 + Ac3H11_517 0.51 -3.5
220,391 + Ac3H11_517 0.51 -0.4
220,392 - Ac3H11_517 0.51 +1.9
220,392 - Ac3H11_517 0.51 -0.8
220,392 - Ac3H11_517 0.51 +0.6
220,473 + Ac3H11_517 0.56 +0.3
220,473 + Ac3H11_517 0.56 -1.1
220,474 - Ac3H11_517 0.56 +1.2
220,474 - Ac3H11_517 0.56 +0.2
220,523 + Ac3H11_517 0.59 -1.8
220,523 + Ac3H11_517 0.59 +0.4
220,524 - Ac3H11_517 0.59 -3.3
220,584 - Ac3H11_517 0.63 -3.0
220,584 - Ac3H11_517 0.63 -0.2
220,779 - Ac3H11_517 0.74 -2.4
220,790 + Ac3H11_517 0.75 -2.7
220,791 - Ac3H11_517 0.75 -1.3
220,791 - Ac3H11_517 0.75 -1.3
220,791 - Ac3H11_517 0.75 -2.4
220,883 + Ac3H11_517 0.81 +0.9
220,884 - Ac3H11_517 0.81 -1.0
221,012 + Ac3H11_517 0.88 -0.0
221,012 + Ac3H11_517 0.88 -2.0
221,012 + Ac3H11_517 0.88 +1.6
221,013 - Ac3H11_517 0.88 -1.9
221,013 - Ac3H11_517 0.88 -3.3
221,013 - Ac3H11_517 0.88 -3.4
221,034 + Ac3H11_517 0.90 -0.3
221,034 + Ac3H11_517 0.90 -0.9
221,035 - Ac3H11_517 0.90 -1.0
221,035 - Ac3H11_517 0.90 -0.1
221,108 + +0.8
221,108 + -1.4
221,109 - -1.3
221,109 - -0.8
221,137 + +1.5
221,137 + +1.5
221,138 - -1.4
221,138 - -0.0
221,138 - -2.0
221,138 - +0.1
221,138 - -3.9
221,179 + -0.9
221,179 + -1.6
221,179 + -0.4
221,179 + -1.7
221,188 + +1.6
221,188 + -0.7
221,189 - -2.3
221,189 - -2.5
221,249 + +1.6
221,428 + Ac3H11_518 0.44 -2.4
221,428 + Ac3H11_518 0.44 -1.3
221,428 + Ac3H11_518 0.44 -2.0
221,428 + Ac3H11_518 0.44 -1.7
221,428 + Ac3H11_518 0.44 -1.3
221,428 + Ac3H11_518 0.44 -2.7
221,429 - Ac3H11_518 0.45 -3.7
221,429 - Ac3H11_518 0.45 -2.3
221,429 - Ac3H11_518 0.45 -3.2
221,896 + Ac3H11_519 0.28 +0.1
221,896 + Ac3H11_519 0.28 -0.1
221,896 + Ac3H11_519 0.28 -1.7
221,896 + Ac3H11_519 0.28 +1.0
221,897 - Ac3H11_519 0.28 -1.6
221,897 - Ac3H11_519 0.28 -0.0
221,897 - Ac3H11_519 0.28 +0.3
221,899 + Ac3H11_519 0.28 +1.2
221,900 - Ac3H11_519 0.29 +0.7
221,938 + Ac3H11_519 0.35 +0.8
221,939 - Ac3H11_519 0.35 -0.3
222,200 - Ac3H11_519 0.79 -0.0
222,200 - Ac3H11_519 0.79 +1.2

Or see this region's nucleotide sequence