Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_484

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_482 and Ac3H11_483 are separated by 55 nucleotidesAc3H11_483 and Ac3H11_484 are separated by 48 nucleotidesAc3H11_484 and Ac3H11_485 are separated by 68 nucleotidesAc3H11_485 and Ac3H11_486 are separated by 30 nucleotides Ac3H11_482 - RND multidrug efflux transporter; Acriflavin resistance protein, at 178,045 to 181,206 _482 Ac3H11_483 - Thioredoxin, at 181,262 to 181,594 _483 Ac3H11_484 - Molybdopterin biosynthesis protein MoeA, at 181,643 to 183,010 _484 Ac3H11_485 - GCN5-related N-acetyltransferase, at 183,079 to 183,678 _485 Ac3H11_486 - Molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 183,709 to 184,347 _486 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 180.808 kb on + strand, within Ac3H11_482at 180.951 kb on + strandat 180.951 kb on + strandat 180.951 kb on + strandat 180.952 kb on - strandat 180.952 kb on - strandat 180.952 kb on - strandat 181.059 kb on + strandat 181.059 kb on + strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.204 kb on + strandat 181.204 kb on + strandat 181.205 kb on - strandat 181.205 kb on - strandat 181.223 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.252 kb on + strandat 181.253 kb on - strandat 181.253 kb on - strandat 181.322 kb on + strand, within Ac3H11_483at 181.587 kb on + strandat 181.594 kb on + strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.827 kb on + strand, within Ac3H11_484at 181.827 kb on + strand, within Ac3H11_484at 181.827 kb on + strand, within Ac3H11_484at 181.828 kb on - strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.932 kb on - strand, within Ac3H11_484at 181.932 kb on - strand, within Ac3H11_484at 182.026 kb on + strand, within Ac3H11_484at 182.029 kb on - strand, within Ac3H11_484at 182.338 kb on - strand, within Ac3H11_484at 182.352 kb on + strand, within Ac3H11_484at 182.352 kb on + strand, within Ac3H11_484at 182.412 kb on + strand, within Ac3H11_484at 182.413 kb on - strand, within Ac3H11_484at 182.418 kb on - strand, within Ac3H11_484at 182.796 kb on + strand, within Ac3H11_484at 182.796 kb on + strand, within Ac3H11_484at 182.797 kb on - strand, within Ac3H11_484at 182.970 kb on + strandat 182.970 kb on + strandat 182.970 kb on + strandat 182.971 kb on - strandat 182.971 kb on - strandat 183.080 kb on + strandat 183.080 kb on + strandat 183.081 kb on - strandat 183.081 kb on - strandat 183.081 kb on - strandat 183.081 kb on - strandat 183.081 kb on - strandat 183.143 kb on + strand, within Ac3H11_485at 183.143 kb on + strand, within Ac3H11_485at 183.143 kb on + strand, within Ac3H11_485at 183.143 kb on + strand, within Ac3H11_485at 183.144 kb on - strand, within Ac3H11_485at 183.209 kb on + strand, within Ac3H11_485at 183.209 kb on + strand, within Ac3H11_485at 183.209 kb on + strand, within Ac3H11_485at 183.210 kb on - strand, within Ac3H11_485at 183.272 kb on - strand, within Ac3H11_485at 183.272 kb on - strand, within Ac3H11_485at 183.272 kb on - strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.488 kb on + strand, within Ac3H11_485at 183.489 kb on - strand, within Ac3H11_485at 183.489 kb on - strand, within Ac3H11_485at 183.489 kb on - strand, within Ac3H11_485at 183.489 kb on - strand, within Ac3H11_485at 183.489 kb on - strand, within Ac3H11_485at 183.508 kb on + strand, within Ac3H11_485at 183.509 kb on - strand, within Ac3H11_485at 183.521 kb on + strand, within Ac3H11_485at 183.521 kb on + strand, within Ac3H11_485at 183.522 kb on - strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.578 kb on + strand, within Ac3H11_485at 183.579 kb on - strand, within Ac3H11_485at 183.579 kb on - strand, within Ac3H11_485at 183.579 kb on - strand, within Ac3H11_485at 183.928 kb on + strand, within Ac3H11_486

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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180,808 + Ac3H11_482 0.87 -0.3
180,951 + +1.0
180,951 + -2.7
180,951 + +0.2
180,952 - -2.6
180,952 - -2.7
180,952 - +2.1
181,059 + +0.1
181,059 + +0.8
181,060 - -0.2
181,060 - -1.1
181,060 - +0.4
181,060 - +1.1
181,060 - +0.7
181,105 + +0.8
181,105 + +0.0
181,105 + -0.4
181,105 + +0.9
181,105 + +0.1
181,105 + -1.8
181,105 + -0.1
181,106 - +0.7
181,106 - +0.9
181,106 - +0.2
181,106 - -0.2
181,106 - +0.2
181,106 - -0.6
181,106 - +1.5
181,106 - -1.4
181,106 - -0.2
181,106 - -1.9
181,106 - -0.6
181,106 - -1.8
181,106 - +0.6
181,106 - +0.7
181,106 - -0.8
181,106 - -0.2
181,192 + +0.2
181,192 + -0.1
181,192 + -1.0
181,192 + +0.4
181,192 + -0.7
181,192 + +0.4
181,193 - -2.5
181,193 - -0.8
181,193 - -0.6
181,193 - -0.0
181,193 - +0.8
181,204 + +1.2
181,204 + +0.6
181,205 - +1.9
181,205 - -0.8
181,223 + +0.2
181,249 + +0.1
181,249 + -2.8
181,249 + -0.5
181,249 + +0.4
181,249 + -0.1
181,249 + +1.4
181,249 + +0.3
181,249 + -0.5
181,249 + +1.8
181,250 - +1.5
181,250 - -0.0
181,250 - -0.5
181,250 - -1.6
181,250 - +1.5
181,250 - -0.4
181,250 - +0.2
181,250 - +1.6
181,250 - +0.7
181,250 - +0.2
181,250 - -1.3
181,250 - -0.6
181,250 - +0.8
181,252 + -2.0
181,253 - +1.0
181,253 - -2.6
181,322 + Ac3H11_483 0.18 -0.0
181,587 + -0.6
181,594 + -2.9
181,595 - -3.8
181,595 - +0.0
181,595 - -2.0
181,595 - -0.2
181,827 + Ac3H11_484 0.13 +1.4
181,827 + Ac3H11_484 0.13 -1.1
181,827 + Ac3H11_484 0.13 +0.2
181,828 - Ac3H11_484 0.14 +1.6
181,931 + Ac3H11_484 0.21 -0.2
181,931 + Ac3H11_484 0.21 -0.2
181,931 + Ac3H11_484 0.21 -1.4
181,931 + Ac3H11_484 0.21 -2.3
181,932 - Ac3H11_484 0.21 +0.2
181,932 - Ac3H11_484 0.21 +1.0
182,026 + Ac3H11_484 0.28 +0.7
182,029 - Ac3H11_484 0.28 +1.1
182,338 - Ac3H11_484 0.51 -0.0
182,352 + Ac3H11_484 0.52 +3.3
182,352 + Ac3H11_484 0.52 -0.5
182,412 + Ac3H11_484 0.56 +0.4
182,413 - Ac3H11_484 0.56 -2.6
182,418 - Ac3H11_484 0.57 +0.3
182,796 + Ac3H11_484 0.84 +0.4
182,796 + Ac3H11_484 0.84 -0.1
182,797 - Ac3H11_484 0.84 +0.3
182,970 + +0.9
182,970 + -0.9
182,970 + +0.0
182,971 - +0.9
182,971 - +0.4
183,080 + -0.4
183,080 + +1.5
183,081 - +1.5
183,081 - -1.3
183,081 - +0.9
183,081 - +1.0
183,081 - +0.8
183,143 + Ac3H11_485 0.11 +1.7
183,143 + Ac3H11_485 0.11 +1.5
183,143 + Ac3H11_485 0.11 -0.1
183,143 + Ac3H11_485 0.11 -1.7
183,144 - Ac3H11_485 0.11 +0.7
183,209 + Ac3H11_485 0.22 -1.0
183,209 + Ac3H11_485 0.22 -0.0
183,209 + Ac3H11_485 0.22 -0.8
183,210 - Ac3H11_485 0.22 +1.5
183,272 - Ac3H11_485 0.32 -0.8
183,272 - Ac3H11_485 0.32 +1.0
183,272 - Ac3H11_485 0.32 +0.2
183,488 + Ac3H11_485 0.68 +1.1
183,488 + Ac3H11_485 0.68 +1.5
183,488 + Ac3H11_485 0.68 -0.1
183,488 + Ac3H11_485 0.68 -2.9
183,488 + Ac3H11_485 0.68 +1.0
183,488 + Ac3H11_485 0.68 -3.9
183,488 + Ac3H11_485 0.68 +0.6
183,489 - Ac3H11_485 0.68 -0.0
183,489 - Ac3H11_485 0.68 +1.1
183,489 - Ac3H11_485 0.68 +0.4
183,489 - Ac3H11_485 0.68 -1.3
183,489 - Ac3H11_485 0.68 -0.1
183,508 + Ac3H11_485 0.71 +1.7
183,509 - Ac3H11_485 0.72 +1.6
183,521 + Ac3H11_485 0.74 +0.9
183,521 + Ac3H11_485 0.74 -0.2
183,522 - Ac3H11_485 0.74 +1.6
183,578 + Ac3H11_485 0.83 +1.6
183,578 + Ac3H11_485 0.83 +0.0
183,578 + Ac3H11_485 0.83 -0.5
183,578 + Ac3H11_485 0.83 +1.0
183,578 + Ac3H11_485 0.83 +3.4
183,578 + Ac3H11_485 0.83 +0.5
183,578 + Ac3H11_485 0.83 -0.4
183,578 + Ac3H11_485 0.83 +0.4
183,579 - Ac3H11_485 0.83 +0.2
183,579 - Ac3H11_485 0.83 +0.5
183,579 - Ac3H11_485 0.83 -1.0
183,928 + Ac3H11_486 0.34 -2.6

Or see this region's nucleotide sequence