Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4803

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4801 and Ac3H11_4802 are separated by 134 nucleotidesAc3H11_4802 and Ac3H11_4803 are separated by 15 nucleotidesAc3H11_4803 and Ac3H11_4804 are separated by 37 nucleotides Ac3H11_4801 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 102,908 to 104,710 _4801 Ac3H11_4802 - FIG00347663: hypothetical protein, at 104,845 to 105,654 _4802 Ac3H11_4803 - Dihydroneopterin triphosphate pyrophosphohydolase type 2, at 105,670 to 106,128 _4803 Ac3H11_4804 - Chromosome initiation inhibitor, at 106,166 to 107,095 _4804 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 104.771 kb on + strandat 104.772 kb on - strandat 104.772 kb on - strandat 104.806 kb on + strandat 104.856 kb on + strandat 104.856 kb on + strandat 104.856 kb on + strandat 104.857 kb on - strandat 104.857 kb on - strandat 105.053 kb on - strand, within Ac3H11_4802at 105.053 kb on - strand, within Ac3H11_4802at 105.053 kb on - strand, within Ac3H11_4802at 105.053 kb on - strand, within Ac3H11_4802at 105.241 kb on + strand, within Ac3H11_4802at 105.241 kb on + strand, within Ac3H11_4802at 105.241 kb on + strand, within Ac3H11_4802at 105.241 kb on + strand, within Ac3H11_4802at 105.242 kb on - strand, within Ac3H11_4802at 105.242 kb on - strand, within Ac3H11_4802at 105.242 kb on - strand, within Ac3H11_4802at 105.253 kb on + strand, within Ac3H11_4802at 105.253 kb on + strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.254 kb on - strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.531 kb on + strand, within Ac3H11_4802at 105.532 kb on - strand, within Ac3H11_4802at 105.596 kb on + strandat 105.596 kb on + strandat 105.597 kb on - strandat 105.597 kb on - strandat 105.597 kb on - strandat 105.597 kb on - strandat 105.597 kb on - strandat 105.913 kb on + strand, within Ac3H11_4803at 105.913 kb on + strand, within Ac3H11_4803at 105.913 kb on + strand, within Ac3H11_4803at 105.913 kb on + strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 105.914 kb on - strand, within Ac3H11_4803at 106.184 kb on + strandat 106.184 kb on + strandat 106.184 kb on + strandat 106.185 kb on - strandat 106.185 kb on - strandat 106.185 kb on - strandat 106.185 kb on - strandat 106.248 kb on + strandat 106.248 kb on + strandat 106.249 kb on - strandat 106.249 kb on - strandat 106.260 kb on + strand, within Ac3H11_4804at 106.260 kb on + strand, within Ac3H11_4804at 106.261 kb on - strand, within Ac3H11_4804at 106.261 kb on - strand, within Ac3H11_4804at 106.329 kb on + strand, within Ac3H11_4804at 106.329 kb on + strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.330 kb on - strand, within Ac3H11_4804at 106.385 kb on + strand, within Ac3H11_4804at 106.385 kb on + strand, within Ac3H11_4804at 106.385 kb on + strand, within Ac3H11_4804at 106.385 kb on + strand, within Ac3H11_4804at 106.385 kb on + strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.386 kb on - strand, within Ac3H11_4804at 106.757 kb on + strand, within Ac3H11_4804at 107.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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104,771 + +0.2
104,772 - -0.0
104,772 - +0.3
104,806 + -2.5
104,856 + +1.8
104,856 + -1.0
104,856 + +0.5
104,857 - +0.3
104,857 - -0.3
105,053 - Ac3H11_4802 0.26 +0.4
105,053 - Ac3H11_4802 0.26 -1.3
105,053 - Ac3H11_4802 0.26 -2.2
105,053 - Ac3H11_4802 0.26 +0.9
105,241 + Ac3H11_4802 0.49 +0.1
105,241 + Ac3H11_4802 0.49 -1.9
105,241 + Ac3H11_4802 0.49 +0.1
105,241 + Ac3H11_4802 0.49 -2.6
105,242 - Ac3H11_4802 0.49 +0.5
105,242 - Ac3H11_4802 0.49 +0.2
105,242 - Ac3H11_4802 0.49 +0.9
105,253 + Ac3H11_4802 0.50 +0.6
105,253 + Ac3H11_4802 0.50 +0.6
105,254 - Ac3H11_4802 0.50 +1.4
105,254 - Ac3H11_4802 0.50 +1.6
105,254 - Ac3H11_4802 0.50 +0.6
105,254 - Ac3H11_4802 0.50 +1.5
105,254 - Ac3H11_4802 0.50 +0.5
105,254 - Ac3H11_4802 0.50 -0.6
105,531 + Ac3H11_4802 0.85 -0.4
105,531 + Ac3H11_4802 0.85 -1.3
105,531 + Ac3H11_4802 0.85 +1.7
105,531 + Ac3H11_4802 0.85 -1.4
105,531 + Ac3H11_4802 0.85 -0.4
105,531 + Ac3H11_4802 0.85 +0.7
105,532 - Ac3H11_4802 0.85 +1.3
105,596 + -2.0
105,596 + +0.7
105,597 - +0.1
105,597 - +1.6
105,597 - +3.4
105,597 - -2.3
105,597 - +0.5
105,913 + Ac3H11_4803 0.53 -1.1
105,913 + Ac3H11_4803 0.53 -1.1
105,913 + Ac3H11_4803 0.53 +0.6
105,913 + Ac3H11_4803 0.53 -0.3
105,914 - Ac3H11_4803 0.53 -1.0
105,914 - Ac3H11_4803 0.53 -0.9
105,914 - Ac3H11_4803 0.53 -0.1
105,914 - Ac3H11_4803 0.53 -0.8
105,914 - Ac3H11_4803 0.53 -0.8
105,914 - Ac3H11_4803 0.53 -0.0
105,914 - Ac3H11_4803 0.53 -0.5
106,184 + -1.6
106,184 + +0.4
106,184 + +2.7
106,185 - -1.5
106,185 - +0.6
106,185 - -0.2
106,185 - -0.2
106,248 + +0.4
106,248 + +0.7
106,249 - +1.5
106,249 - -1.7
106,260 + Ac3H11_4804 0.10 +2.6
106,260 + Ac3H11_4804 0.10 +0.2
106,261 - Ac3H11_4804 0.10 +2.5
106,261 - Ac3H11_4804 0.10 +1.6
106,329 + Ac3H11_4804 0.18 +1.0
106,329 + Ac3H11_4804 0.18 -0.8
106,330 - Ac3H11_4804 0.18 -2.6
106,330 - Ac3H11_4804 0.18 +1.0
106,330 - Ac3H11_4804 0.18 +0.7
106,330 - Ac3H11_4804 0.18 -1.5
106,330 - Ac3H11_4804 0.18 +1.7
106,330 - Ac3H11_4804 0.18 -0.1
106,385 + Ac3H11_4804 0.24 -1.4
106,385 + Ac3H11_4804 0.24 +0.0
106,385 + Ac3H11_4804 0.24 +0.6
106,385 + Ac3H11_4804 0.24 -1.9
106,385 + Ac3H11_4804 0.24 +0.7
106,386 - Ac3H11_4804 0.24 -0.4
106,386 - Ac3H11_4804 0.24 +0.7
106,386 - Ac3H11_4804 0.24 +0.2
106,386 - Ac3H11_4804 0.24 -0.1
106,386 - Ac3H11_4804 0.24 -0.3
106,386 - Ac3H11_4804 0.24 +1.0
106,757 + Ac3H11_4804 0.64 -1.8
107,101 - -3.4

Or see this region's nucleotide sequence