Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4597

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4596 and Ac3H11_4597 are separated by 18 nucleotidesAc3H11_4597 and Ac3H11_4598 are separated by 176 nucleotidesAc3H11_4598 and Ac3H11_4599 are separated by 394 nucleotides Ac3H11_4596 - Multicopper oxidase, at 196,265 to 197,677 _4596 Ac3H11_4597 - Copper tolerance protein, at 197,696 to 198,949 _4597 Ac3H11_4598 - hypothetical protein, at 199,126 to 199,335 _4598 Ac3H11_4599 - DNA-binding heavy metal response regulator, at 199,730 to 200,275 _4599 Position (kb) 197 198 199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 196.800 kb on + strand, within Ac3H11_4596at 196.800 kb on + strand, within Ac3H11_4596at 196.800 kb on + strand, within Ac3H11_4596at 196.800 kb on + strand, within Ac3H11_4596at 196.801 kb on - strand, within Ac3H11_4596at 196.801 kb on - strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.166 kb on + strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.167 kb on - strand, within Ac3H11_4596at 197.202 kb on + strand, within Ac3H11_4596at 197.203 kb on - strand, within Ac3H11_4596at 197.203 kb on - strand, within Ac3H11_4596at 197.293 kb on + strand, within Ac3H11_4596at 197.385 kb on + strand, within Ac3H11_4596at 197.385 kb on + strand, within Ac3H11_4596at 197.385 kb on + strand, within Ac3H11_4596at 197.386 kb on - strand, within Ac3H11_4596at 197.517 kb on + strand, within Ac3H11_4596at 197.517 kb on + strand, within Ac3H11_4596at 197.517 kb on + strand, within Ac3H11_4596at 197.518 kb on - strand, within Ac3H11_4596at 197.895 kb on + strand, within Ac3H11_4597at 197.927 kb on - strand, within Ac3H11_4597at 197.970 kb on + strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.971 kb on - strand, within Ac3H11_4597at 197.991 kb on + strand, within Ac3H11_4597at 197.992 kb on - strand, within Ac3H11_4597at 197.992 kb on - strand, within Ac3H11_4597at 198.182 kb on + strand, within Ac3H11_4597at 198.182 kb on + strand, within Ac3H11_4597at 198.183 kb on - strand, within Ac3H11_4597at 198.465 kb on + strand, within Ac3H11_4597at 198.465 kb on + strand, within Ac3H11_4597at 198.465 kb on + strand, within Ac3H11_4597at 198.465 kb on + strand, within Ac3H11_4597at 198.466 kb on - strand, within Ac3H11_4597at 198.466 kb on - strand, within Ac3H11_4597at 198.466 kb on - strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.573 kb on + strand, within Ac3H11_4597at 198.574 kb on - strand, within Ac3H11_4597at 198.620 kb on + strand, within Ac3H11_4597at 198.620 kb on + strand, within Ac3H11_4597at 198.620 kb on + strand, within Ac3H11_4597at 198.620 kb on + strand, within Ac3H11_4597at 198.620 kb on + strand, within Ac3H11_4597at 198.641 kb on + strand, within Ac3H11_4597at 198.641 kb on + strand, within Ac3H11_4597at 198.641 kb on + strand, within Ac3H11_4597at 198.642 kb on - strand, within Ac3H11_4597at 198.692 kb on - strand, within Ac3H11_4597at 198.793 kb on + strand, within Ac3H11_4597at 198.793 kb on + strand, within Ac3H11_4597at 198.793 kb on + strand, within Ac3H11_4597at 198.793 kb on + strand, within Ac3H11_4597at 198.793 kb on + strand, within Ac3H11_4597at 198.794 kb on - strand, within Ac3H11_4597at 198.875 kb on - strandat 198.875 kb on - strandat 198.982 kb on + strandat 198.982 kb on + strandat 198.982 kb on + strandat 198.982 kb on + strandat 198.982 kb on + strandat 198.982 kb on + strandat 198.983 kb on - strandat 198.983 kb on - strandat 198.983 kb on - strandat 199.094 kb on + strandat 199.094 kb on + strandat 199.094 kb on + strandat 199.094 kb on + strandat 199.095 kb on - strandat 199.095 kb on - strandat 199.095 kb on - strandat 199.095 kb on - strandat 199.095 kb on - strandat 199.120 kb on + strandat 199.121 kb on - strandat 199.215 kb on - strand, within Ac3H11_4598at 199.215 kb on - strand, within Ac3H11_4598at 199.215 kb on - strand, within Ac3H11_4598at 199.287 kb on - strand, within Ac3H11_4598at 199.296 kb on - strand, within Ac3H11_4598at 199.296 kb on - strand, within Ac3H11_4598at 199.296 kb on - strand, within Ac3H11_4598at 199.328 kb on + strandat 199.328 kb on + strandat 199.329 kb on - strandat 199.416 kb on + strandat 199.416 kb on + strandat 199.416 kb on + strandat 199.443 kb on + strandat 199.443 kb on + strandat 199.497 kb on + strandat 199.501 kb on + strandat 199.501 kb on + strandat 199.501 kb on + strandat 199.501 kb on + strandat 199.513 kb on + strandat 199.513 kb on + strandat 199.513 kb on + strandat 199.513 kb on + strandat 199.514 kb on - strandat 199.514 kb on - strandat 199.514 kb on - strandat 199.514 kb on - strandat 199.514 kb on - strandat 199.514 kb on - strandat 199.596 kb on + strandat 199.596 kb on + strandat 199.596 kb on + strandat 199.596 kb on + strandat 199.597 kb on - strandat 199.631 kb on + strandat 199.632 kb on - strandat 199.632 kb on - strandat 199.721 kb on + strandat 199.721 kb on + strandat 199.722 kb on - strandat 199.722 kb on - strandat 199.722 kb on - strandat 199.722 kb on - strandat 199.722 kb on - strandat 199.783 kb on + strandat 199.783 kb on + strandat 199.783 kb on + strandat 199.783 kb on + strandat 199.783 kb on + strandat 199.784 kb on - strandat 199.784 kb on - strandat 199.815 kb on + strand, within Ac3H11_4599at 199.815 kb on + strand, within Ac3H11_4599at 199.815 kb on + strand, within Ac3H11_4599at 199.815 kb on + strand, within Ac3H11_4599at 199.816 kb on - strand, within Ac3H11_4599at 199.816 kb on - strand, within Ac3H11_4599at 199.860 kb on + strand, within Ac3H11_4599at 199.860 kb on + strand, within Ac3H11_4599at 199.860 kb on + strand, within Ac3H11_4599at 199.860 kb on + strand, within Ac3H11_4599at 199.861 kb on - strand, within Ac3H11_4599at 199.861 kb on - strand, within Ac3H11_4599at 199.880 kb on + strand, within Ac3H11_4599at 199.880 kb on + strand, within Ac3H11_4599at 199.881 kb on - strand, within Ac3H11_4599at 199.932 kb on + strand, within Ac3H11_4599at 199.932 kb on + strand, within Ac3H11_4599at 199.932 kb on + strand, within Ac3H11_4599at 199.933 kb on - strand, within Ac3H11_4599at 199.933 kb on - strand, within Ac3H11_4599at 199.933 kb on - strand, within Ac3H11_4599

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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196,800 + Ac3H11_4596 0.38 -1.0
196,800 + Ac3H11_4596 0.38 -2.8
196,800 + Ac3H11_4596 0.38 -2.5
196,800 + Ac3H11_4596 0.38 -2.7
196,801 - Ac3H11_4596 0.38 +0.8
196,801 - Ac3H11_4596 0.38 -1.6
197,166 + Ac3H11_4596 0.64 -0.6
197,166 + Ac3H11_4596 0.64 +0.2
197,166 + Ac3H11_4596 0.64 +0.1
197,166 + Ac3H11_4596 0.64 -3.2
197,166 + Ac3H11_4596 0.64 +0.6
197,166 + Ac3H11_4596 0.64 +1.9
197,166 + Ac3H11_4596 0.64 +1.4
197,167 - Ac3H11_4596 0.64 +1.2
197,167 - Ac3H11_4596 0.64 -1.4
197,167 - Ac3H11_4596 0.64 +0.1
197,167 - Ac3H11_4596 0.64 +2.3
197,167 - Ac3H11_4596 0.64 +0.9
197,167 - Ac3H11_4596 0.64 -2.0
197,202 + Ac3H11_4596 0.66 +0.5
197,203 - Ac3H11_4596 0.66 -0.3
197,203 - Ac3H11_4596 0.66 +0.6
197,293 + Ac3H11_4596 0.73 -0.1
197,385 + Ac3H11_4596 0.79 -0.3
197,385 + Ac3H11_4596 0.79 -0.1
197,385 + Ac3H11_4596 0.79 +0.9
197,386 - Ac3H11_4596 0.79 +1.6
197,517 + Ac3H11_4596 0.89 -1.3
197,517 + Ac3H11_4596 0.89 -3.1
197,517 + Ac3H11_4596 0.89 -0.5
197,518 - Ac3H11_4596 0.89 -0.5
197,895 + Ac3H11_4597 0.16 +1.1
197,927 - Ac3H11_4597 0.18 +1.1
197,970 + Ac3H11_4597 0.22 -0.9
197,971 - Ac3H11_4597 0.22 +1.3
197,971 - Ac3H11_4597 0.22 +0.3
197,971 - Ac3H11_4597 0.22 -1.5
197,971 - Ac3H11_4597 0.22 -1.6
197,971 - Ac3H11_4597 0.22 +0.7
197,971 - Ac3H11_4597 0.22 -0.3
197,971 - Ac3H11_4597 0.22 +1.0
197,971 - Ac3H11_4597 0.22 -1.1
197,991 + Ac3H11_4597 0.24 -1.0
197,992 - Ac3H11_4597 0.24 -2.1
197,992 - Ac3H11_4597 0.24 -2.8
198,182 + Ac3H11_4597 0.39 -1.8
198,182 + Ac3H11_4597 0.39 +1.0
198,183 - Ac3H11_4597 0.39 -3.5
198,465 + Ac3H11_4597 0.61 +0.6
198,465 + Ac3H11_4597 0.61 +0.8
198,465 + Ac3H11_4597 0.61 +0.2
198,465 + Ac3H11_4597 0.61 +0.9
198,466 - Ac3H11_4597 0.61 +0.1
198,466 - Ac3H11_4597 0.61 +0.6
198,466 - Ac3H11_4597 0.61 -1.3
198,573 + Ac3H11_4597 0.70 -0.3
198,573 + Ac3H11_4597 0.70 -0.7
198,573 + Ac3H11_4597 0.70 -0.1
198,573 + Ac3H11_4597 0.70 -2.3
198,573 + Ac3H11_4597 0.70 -0.6
198,573 + Ac3H11_4597 0.70 -2.0
198,574 - Ac3H11_4597 0.70 +1.9
198,620 + Ac3H11_4597 0.74 +0.9
198,620 + Ac3H11_4597 0.74 +0.4
198,620 + Ac3H11_4597 0.74 +0.2
198,620 + Ac3H11_4597 0.74 +1.2
198,620 + Ac3H11_4597 0.74 +0.2
198,641 + Ac3H11_4597 0.75 -1.4
198,641 + Ac3H11_4597 0.75 -0.8
198,641 + Ac3H11_4597 0.75 -1.1
198,642 - Ac3H11_4597 0.75 +2.0
198,692 - Ac3H11_4597 0.79 +0.0
198,793 + Ac3H11_4597 0.87 +0.2
198,793 + Ac3H11_4597 0.87 -0.1
198,793 + Ac3H11_4597 0.87 -0.8
198,793 + Ac3H11_4597 0.87 -3.2
198,793 + Ac3H11_4597 0.87 -0.4
198,794 - Ac3H11_4597 0.88 +0.2
198,875 - -0.5
198,875 - -1.6
198,982 + -1.4
198,982 + +0.5
198,982 + -0.9
198,982 + +0.6
198,982 + -0.3
198,982 + -0.9
198,983 - -1.0
198,983 - +0.7
198,983 - -0.8
199,094 + +1.9
199,094 + +1.2
199,094 + +0.5
199,094 + -0.3
199,095 - +1.7
199,095 - +0.4
199,095 - +0.1
199,095 - -2.8
199,095 - +1.6
199,120 + -3.7
199,121 - +0.6
199,215 - Ac3H11_4598 0.42 +0.4
199,215 - Ac3H11_4598 0.42 -0.9
199,215 - Ac3H11_4598 0.42 -1.0
199,287 - Ac3H11_4598 0.77 -4.4
199,296 - Ac3H11_4598 0.81 -2.0
199,296 - Ac3H11_4598 0.81 -1.6
199,296 - Ac3H11_4598 0.81 +0.6
199,328 + +0.3
199,328 + +0.2
199,329 - -2.5
199,416 + -0.5
199,416 + -0.1
199,416 + -0.9
199,443 + -0.9
199,443 + +1.3
199,497 + -0.6
199,501 + +0.4
199,501 + -1.0
199,501 + +0.1
199,501 + -1.2
199,513 + -1.1
199,513 + +0.7
199,513 + -1.0
199,513 + +0.6
199,514 - +0.0
199,514 - -0.1
199,514 - +2.4
199,514 - -1.0
199,514 - -0.9
199,514 - +0.9
199,596 + -3.4
199,596 + -0.0
199,596 + +2.5
199,596 + -3.0
199,597 - -0.2
199,631 + -1.5
199,632 - -0.6
199,632 - -3.6
199,721 + -0.6
199,721 + +0.2
199,722 - -2.4
199,722 - +0.5
199,722 - -3.2
199,722 - -0.8
199,722 - -3.4
199,783 + +0.5
199,783 + -0.2
199,783 + -0.7
199,783 + +1.7
199,783 + +0.3
199,784 - +0.1
199,784 - -0.8
199,815 + Ac3H11_4599 0.16 +1.2
199,815 + Ac3H11_4599 0.16 -0.0
199,815 + Ac3H11_4599 0.16 -0.3
199,815 + Ac3H11_4599 0.16 -2.3
199,816 - Ac3H11_4599 0.16 -1.9
199,816 - Ac3H11_4599 0.16 +1.1
199,860 + Ac3H11_4599 0.24 -0.0
199,860 + Ac3H11_4599 0.24 +0.9
199,860 + Ac3H11_4599 0.24 +0.2
199,860 + Ac3H11_4599 0.24 +2.0
199,861 - Ac3H11_4599 0.24 +2.3
199,861 - Ac3H11_4599 0.24 +0.8
199,880 + Ac3H11_4599 0.27 +0.1
199,880 + Ac3H11_4599 0.27 +1.7
199,881 - Ac3H11_4599 0.28 +0.8
199,932 + Ac3H11_4599 0.37 -0.2
199,932 + Ac3H11_4599 0.37 -2.4
199,932 + Ac3H11_4599 0.37 -1.3
199,933 - Ac3H11_4599 0.37 +1.5
199,933 - Ac3H11_4599 0.37 +1.0
199,933 - Ac3H11_4599 0.37 +0.8

Or see this region's nucleotide sequence