Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4573 and Ac3H11_4574 are separated by 100 nucleotides Ac3H11_4574 and Ac3H11_4575 are separated by 5 nucleotides Ac3H11_4575 and Ac3H11_4576 are separated by 433 nucleotides Ac3H11_4576 and Ac3H11_4577 are separated by 221 nucleotides
Ac3H11_4573 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 169,634 to 172,930
_4573
Ac3H11_4574 - hypothetical protein, at 173,031 to 173,426
_4574
Ac3H11_4575 - Permease of the drug/metabolite transporter (DMT) superfamily, at 173,432 to 174,628
_4575
Ac3H11_4576 - hypothetical protein, at 175,062 to 175,379
_4576
Ac3H11_4577 - Superoxide dismutase SodM-like protein ChrF, at 175,601 to 175,915
_4577
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 172.601 kb on + strand at 172.601 kb on + strand at 172.601 kb on + strand at 172.601 kb on + strand at 172.601 kb on + strand at 172.601 kb on + strand at 172.750 kb on + strand at 172.912 kb on - strand at 172.912 kb on - strand at 172.912 kb on - strand at 172.947 kb on - strand at 172.947 kb on - strand at 172.947 kb on - strand at 172.947 kb on - strand at 172.968 kb on - strand at 173.212 kb on - strand, within Ac3H11_4574 at 173.212 kb on - strand, within Ac3H11_4574 at 173.212 kb on - strand, within Ac3H11_4574 at 173.212 kb on - strand, within Ac3H11_4574 at 173.212 kb on - strand, within Ac3H11_4574 at 173.212 kb on - strand, within Ac3H11_4574 at 173.408 kb on - strand at 173.424 kb on + strand at 173.424 kb on + strand at 173.424 kb on + strand at 173.424 kb on + strand at 173.424 kb on + strand at 173.424 kb on + strand at 173.425 kb on - strand at 173.425 kb on - strand at 173.425 kb on - strand at 173.573 kb on + strand, within Ac3H11_4575 at 173.574 kb on - strand, within Ac3H11_4575 at 173.574 kb on - strand, within Ac3H11_4575 at 173.574 kb on - strand, within Ac3H11_4575 at 173.574 kb on - strand, within Ac3H11_4575 at 173.574 kb on - strand, within Ac3H11_4575 at 173.688 kb on + strand, within Ac3H11_4575 at 173.688 kb on + strand, within Ac3H11_4575 at 173.688 kb on + strand, within Ac3H11_4575 at 173.689 kb on - strand, within Ac3H11_4575 at 173.689 kb on - strand, within Ac3H11_4575 at 173.795 kb on + strand, within Ac3H11_4575 at 173.795 kb on + strand, within Ac3H11_4575 at 173.795 kb on + strand, within Ac3H11_4575 at 173.795 kb on + strand, within Ac3H11_4575 at 173.795 kb on + strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.796 kb on - strand, within Ac3H11_4575 at 173.797 kb on + strand, within Ac3H11_4575 at 173.994 kb on + strand, within Ac3H11_4575 at 173.994 kb on + strand, within Ac3H11_4575 at 174.082 kb on - strand, within Ac3H11_4575 at 174.082 kb on - strand, within Ac3H11_4575 at 174.082 kb on - strand, within Ac3H11_4575 at 174.514 kb on + strand at 174.514 kb on + strand at 174.515 kb on - strand at 174.515 kb on - strand at 174.515 kb on - strand at 174.515 kb on - strand at 174.551 kb on - strand at 174.743 kb on + strand at 174.744 kb on - strand at 174.744 kb on - strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.966 kb on - strand at 174.966 kb on - strand at 174.999 kb on + strand at 174.999 kb on + strand at 175.044 kb on - strand at 175.097 kb on - strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.424 kb on + strand at 175.424 kb on + strand at 175.425 kb on - strand at 175.425 kb on - strand at 175.425 kb on - strand at 175.445 kb on + strand at 175.446 kb on - strand at 175.469 kb on - strand at 175.469 kb on - strand at 175.497 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.530 kb on + strand at 175.531 kb on - strand at 175.531 kb on - strand at 175.550 kb on + strand at 175.550 kb on + strand at 175.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 172,601 + -2.2 172,601 + -0.4 172,601 + -1.8 172,601 + -1.9 172,601 + +1.2 172,601 + -1.5 172,750 + -2.0 172,912 - +1.5 172,912 - -0.8 172,912 - +1.2 172,947 - +0.2 172,947 - -0.9 172,947 - -1.6 172,947 - -1.3 172,968 - +0.8 173,212 - Ac3H11_4574 0.46 -2.1 173,212 - Ac3H11_4574 0.46 -1.6 173,212 - Ac3H11_4574 0.46 -1.4 173,212 - Ac3H11_4574 0.46 +0.0 173,212 - Ac3H11_4574 0.46 -1.2 173,212 - Ac3H11_4574 0.46 -3.5 173,408 - +0.1 173,424 + -0.5 173,424 + +0.6 173,424 + -0.1 173,424 + -1.4 173,424 + -2.6 173,424 + +1.9 173,425 - +0.1 173,425 - -0.3 173,425 - -1.7 173,573 + Ac3H11_4575 0.12 +0.1 173,574 - Ac3H11_4575 0.12 +0.5 173,574 - Ac3H11_4575 0.12 -3.1 173,574 - Ac3H11_4575 0.12 -0.3 173,574 - Ac3H11_4575 0.12 +0.7 173,574 - Ac3H11_4575 0.12 +0.2 173,688 + Ac3H11_4575 0.21 -1.2 173,688 + Ac3H11_4575 0.21 +0.1 173,688 + Ac3H11_4575 0.21 -0.6 173,689 - Ac3H11_4575 0.21 +0.2 173,689 - Ac3H11_4575 0.21 -1.2 173,795 + Ac3H11_4575 0.30 -1.0 173,795 + Ac3H11_4575 0.30 -3.4 173,795 + Ac3H11_4575 0.30 +2.0 173,795 + Ac3H11_4575 0.30 -1.3 173,795 + Ac3H11_4575 0.30 -0.8 173,796 - Ac3H11_4575 0.30 +0.8 173,796 - Ac3H11_4575 0.30 -2.5 173,796 - Ac3H11_4575 0.30 +0.9 173,796 - Ac3H11_4575 0.30 -0.6 173,796 - Ac3H11_4575 0.30 -3.3 173,796 - Ac3H11_4575 0.30 +0.5 173,796 - Ac3H11_4575 0.30 +0.3 173,796 - Ac3H11_4575 0.30 -1.5 173,796 - Ac3H11_4575 0.30 +1.1 173,796 - Ac3H11_4575 0.30 -0.6 173,796 - Ac3H11_4575 0.30 +0.7 173,797 + Ac3H11_4575 0.30 -0.2 173,994 + Ac3H11_4575 0.47 +0.7 173,994 + Ac3H11_4575 0.47 -1.9 174,082 - Ac3H11_4575 0.54 -2.6 174,082 - Ac3H11_4575 0.54 -2.8 174,082 - Ac3H11_4575 0.54 -1.1 174,514 + +0.1 174,514 + -0.5 174,515 - -0.6 174,515 - -1.9 174,515 - -1.5 174,515 - -0.8 174,551 - -1.6 174,743 + +0.5 174,744 - -2.1 174,744 - +1.0 174,965 + +0.7 174,965 + -0.8 174,965 + -0.5 174,965 + +1.5 174,966 - -2.2 174,966 - +1.1 174,999 + -0.2 174,999 + +2.7 175,044 - +0.4 175,097 - Ac3H11_4576 0.11 +0.9 175,276 + Ac3H11_4576 0.67 +1.9 175,276 + Ac3H11_4576 0.67 +1.5 175,276 + Ac3H11_4576 0.67 +1.5 175,276 + Ac3H11_4576 0.67 -1.1 175,276 + Ac3H11_4576 0.67 +0.5 175,276 + Ac3H11_4576 0.67 -0.2 175,276 + Ac3H11_4576 0.67 +0.5 175,277 - Ac3H11_4576 0.68 +0.7 175,277 - Ac3H11_4576 0.68 +0.2 175,277 - Ac3H11_4576 0.68 -1.9 175,277 - +0.1 175,277 - Ac3H11_4576 0.68 +1.2 175,277 - Ac3H11_4576 0.68 -0.6 175,424 + +1.8 175,424 + -0.9 175,425 - +2.2 175,425 - +1.1 175,425 - -1.6 175,445 + -3.8 175,446 - -1.5 175,469 - +0.3 175,469 - +0.5 175,497 + -0.0 175,507 + -1.0 175,507 + +1.4 175,507 + -1.0 175,507 + -1.2 175,507 + +0.5 175,507 + -1.7 175,508 - -0.2 175,508 - +0.6 175,508 - -1.2 175,508 - -2.7 175,530 + +0.1 175,531 - +0.2 175,531 - -1.4 175,550 + +0.8 175,550 + -1.8 175,551 - -0.6
Or see this region's nucleotide sequence