Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_384 and Ac3H11_385 are separated by 76 nucleotides Ac3H11_385 and Ac3H11_386 are separated by 100 nucleotides Ac3H11_386 and Ac3H11_387 are separated by 250 nucleotides
Ac3H11_384 - possible endonuclease/exonuclease/phosphatase family protein, at 63,343 to 64,386
_384
Ac3H11_385 - Nucleoside-diphosphate-sugar epimerases, at 64,463 to 65,023
_385
Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935
_386
Ac3H11_387 - ABC transporter ATP-binding protein, at 67,186 to 68,847
_387
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.140 kb on - strand, within Ac3H11_384 at 64.140 kb on - strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.295 kb on + strand at 64.295 kb on + strand at 64.296 kb on - strand at 64.296 kb on - strand at 64.296 kb on - strand at 64.412 kb on - strand at 64.520 kb on + strand, within Ac3H11_385 at 64.520 kb on + strand, within Ac3H11_385 at 64.520 kb on + strand, within Ac3H11_385 at 64.521 kb on - strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.684 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.791 kb on - strand, within Ac3H11_385 at 64.851 kb on + strand, within Ac3H11_385 at 64.851 kb on + strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 65.133 kb on - strand at 65.133 kb on - strand at 65.271 kb on + strand at 65.272 kb on - strand at 65.355 kb on - strand, within Ac3H11_386 at 65.396 kb on - strand, within Ac3H11_386 at 65.396 kb on - strand, within Ac3H11_386 at 65.944 kb on + strand, within Ac3H11_386 at 65.944 kb on + strand, within Ac3H11_386 at 66.646 kb on - strand, within Ac3H11_386 at 67.125 kb on + strand at 67.125 kb on + strand at 67.172 kb on + strand at 67.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 64,140 - Ac3H11_384 0.76 -2.0 64,140 - Ac3H11_384 0.76 +0.1 64,277 + Ac3H11_384 0.89 -0.6 64,277 + Ac3H11_384 0.89 +1.3 64,277 + Ac3H11_384 0.89 -0.0 64,277 + Ac3H11_384 0.89 -2.8 64,278 - Ac3H11_384 0.90 +3.1 64,278 - Ac3H11_384 0.90 -0.5 64,278 - Ac3H11_384 0.90 -0.2 64,295 + +1.4 64,295 + +1.0 64,296 - +0.6 64,296 - +0.1 64,296 - +0.4 64,412 - -1.6 64,520 + Ac3H11_385 0.10 +2.0 64,520 + Ac3H11_385 0.10 -0.0 64,520 + Ac3H11_385 0.10 -0.6 64,521 - Ac3H11_385 0.10 -0.3 64,569 + Ac3H11_385 0.19 -0.3 64,569 + Ac3H11_385 0.19 -1.3 64,569 + Ac3H11_385 0.19 +0.2 64,569 + Ac3H11_385 0.19 +1.1 64,570 - Ac3H11_385 0.19 +1.0 64,570 - Ac3H11_385 0.19 +1.7 64,570 - Ac3H11_385 0.19 -1.0 64,684 + Ac3H11_385 0.39 +0.6 64,749 + Ac3H11_385 0.51 +0.9 64,749 + Ac3H11_385 0.51 -0.4 64,749 + Ac3H11_385 0.51 -0.1 64,750 - Ac3H11_385 0.51 +0.8 64,750 - Ac3H11_385 0.51 +0.3 64,750 - Ac3H11_385 0.51 -0.7 64,790 + Ac3H11_385 0.58 -0.4 64,790 + Ac3H11_385 0.58 -1.7 64,790 + Ac3H11_385 0.58 -0.3 64,791 - Ac3H11_385 0.58 -2.5 64,851 + Ac3H11_385 0.69 -1.2 64,851 + Ac3H11_385 0.69 -0.1 64,852 - Ac3H11_385 0.69 +0.7 64,852 - Ac3H11_385 0.69 -0.6 64,852 - Ac3H11_385 0.69 -0.7 64,852 - Ac3H11_385 0.69 -0.9 64,914 + Ac3H11_385 0.80 +0.3 64,914 + Ac3H11_385 0.80 -2.5 64,914 + Ac3H11_385 0.80 -0.2 64,914 + Ac3H11_385 0.80 +1.2 64,914 + Ac3H11_385 0.80 -1.9 64,914 + Ac3H11_385 0.80 -2.3 64,914 + Ac3H11_385 0.80 +2.8 64,914 + Ac3H11_385 0.80 -0.1 64,914 + Ac3H11_385 0.80 -1.1 64,914 + Ac3H11_385 0.80 +0.2 64,914 + Ac3H11_385 0.80 +0.5 64,915 - Ac3H11_385 0.81 -0.4 64,915 - Ac3H11_385 0.81 +1.4 64,915 - Ac3H11_385 0.81 +1.4 64,915 - Ac3H11_385 0.81 -1.7 64,915 - Ac3H11_385 0.81 +0.1 64,915 - Ac3H11_385 0.81 +1.1 64,915 - Ac3H11_385 0.81 -0.8 64,915 - Ac3H11_385 0.81 -2.4 64,915 - Ac3H11_385 0.81 -1.1 64,915 - Ac3H11_385 0.81 +0.3 64,915 - Ac3H11_385 0.81 -0.6 64,915 - Ac3H11_385 0.81 +1.8 64,915 - Ac3H11_385 0.81 +0.8 65,133 - +0.1 65,133 - +0.5 65,271 + +2.7 65,272 - +1.0 65,355 - Ac3H11_386 0.13 -1.8 65,396 - Ac3H11_386 0.15 -2.4 65,396 - Ac3H11_386 0.15 -0.3 65,944 + Ac3H11_386 0.45 -1.3 65,944 + Ac3H11_386 0.45 -3.5 66,646 - Ac3H11_386 0.84 -0.4 67,125 + +0.2 67,125 + -0.7 67,172 + -1.1 67,172 + -0.4
Or see this region's nucleotide sequence