Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_383 and Ac3H11_384 are separated by 156 nucleotides Ac3H11_384 and Ac3H11_385 are separated by 76 nucleotides Ac3H11_385 and Ac3H11_386 are separated by 100 nucleotides
Ac3H11_383 - FIG01198699: hypothetical protein, at 61,297 to 63,186
_383
Ac3H11_384 - possible endonuclease/exonuclease/phosphatase family protein, at 63,343 to 64,386
_384
Ac3H11_385 - Nucleoside-diphosphate-sugar epimerases, at 64,463 to 65,023
_385
Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935
_386
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.685 kb on + strand, within Ac3H11_383 at 62.685 kb on + strand, within Ac3H11_383 at 62.685 kb on + strand, within Ac3H11_383 at 62.686 kb on - strand, within Ac3H11_383 at 62.786 kb on + strand, within Ac3H11_383 at 62.786 kb on + strand, within Ac3H11_383 at 62.786 kb on + strand, within Ac3H11_383 at 62.786 kb on + strand, within Ac3H11_383 at 62.787 kb on - strand, within Ac3H11_383 at 62.787 kb on - strand, within Ac3H11_383 at 62.787 kb on - strand, within Ac3H11_383 at 62.787 kb on - strand, within Ac3H11_383 at 62.832 kb on - strand, within Ac3H11_383 at 62.832 kb on - strand, within Ac3H11_383 at 62.832 kb on - strand, within Ac3H11_383 at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand at 63.239 kb on - strand at 63.239 kb on - strand at 63.239 kb on - strand at 63.263 kb on - strand at 63.270 kb on + strand at 63.270 kb on + strand at 63.271 kb on - strand at 63.271 kb on - strand at 63.271 kb on - strand at 63.344 kb on + strand at 63.345 kb on - strand at 63.455 kb on + strand, within Ac3H11_384 at 63.455 kb on + strand, within Ac3H11_384 at 63.455 kb on + strand, within Ac3H11_384 at 63.456 kb on - strand, within Ac3H11_384 at 63.456 kb on - strand, within Ac3H11_384 at 63.456 kb on - strand, within Ac3H11_384 at 63.456 kb on - strand, within Ac3H11_384 at 63.605 kb on + strand, within Ac3H11_384 at 63.605 kb on + strand, within Ac3H11_384 at 63.742 kb on + strand, within Ac3H11_384 at 63.742 kb on + strand, within Ac3H11_384 at 63.742 kb on + strand, within Ac3H11_384 at 63.742 kb on + strand, within Ac3H11_384 at 63.743 kb on - strand, within Ac3H11_384 at 63.743 kb on - strand, within Ac3H11_384 at 63.743 kb on - strand at 63.743 kb on - strand, within Ac3H11_384 at 64.036 kb on + strand, within Ac3H11_384 at 64.140 kb on - strand, within Ac3H11_384 at 64.140 kb on - strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.277 kb on + strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.278 kb on - strand, within Ac3H11_384 at 64.295 kb on + strand at 64.295 kb on + strand at 64.296 kb on - strand at 64.296 kb on - strand at 64.296 kb on - strand at 64.412 kb on - strand at 64.520 kb on + strand, within Ac3H11_385 at 64.520 kb on + strand, within Ac3H11_385 at 64.520 kb on + strand, within Ac3H11_385 at 64.521 kb on - strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.569 kb on + strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.570 kb on - strand, within Ac3H11_385 at 64.684 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.749 kb on + strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.750 kb on - strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.790 kb on + strand, within Ac3H11_385 at 64.791 kb on - strand, within Ac3H11_385 at 64.851 kb on + strand, within Ac3H11_385 at 64.851 kb on + strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.852 kb on - strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.914 kb on + strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 64.915 kb on - strand, within Ac3H11_385 at 65.133 kb on - strand at 65.133 kb on - strand at 65.271 kb on + strand at 65.272 kb on - strand at 65.355 kb on - strand, within Ac3H11_386
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 62,685 + Ac3H11_383 0.73 +2.0 62,685 + Ac3H11_383 0.73 +0.8 62,685 + Ac3H11_383 0.73 -2.3 62,686 - Ac3H11_383 0.73 +0.1 62,786 + Ac3H11_383 0.79 +1.0 62,786 + Ac3H11_383 0.79 +1.5 62,786 + Ac3H11_383 0.79 -0.2 62,786 + Ac3H11_383 0.79 +1.1 62,787 - Ac3H11_383 0.79 +1.2 62,787 - Ac3H11_383 0.79 +1.1 62,787 - Ac3H11_383 0.79 -0.0 62,787 - Ac3H11_383 0.79 -2.5 62,832 - Ac3H11_383 0.81 +0.8 62,832 - Ac3H11_383 0.81 -0.2 62,832 - Ac3H11_383 0.81 -3.0 63,235 + -1.8 63,235 + -0.7 63,235 + +1.0 63,235 + +1.0 63,235 + +0.8 63,235 + +0.1 63,235 + -0.7 63,235 + +0.4 63,236 - -1.7 63,236 - +0.3 63,236 - +0.1 63,236 - -1.3 63,236 - -1.5 63,236 - -0.2 63,238 + +0.6 63,238 + -0.5 63,238 + -2.5 63,238 + -0.8 63,238 + +0.8 63,238 + -3.0 63,238 + +1.9 63,238 + +0.0 63,239 - +0.8 63,239 - +0.8 63,239 - -0.3 63,263 - -1.0 63,270 + +0.2 63,270 + -2.7 63,271 - +0.8 63,271 - +1.0 63,271 - -1.5 63,344 + +1.6 63,345 - -2.4 63,455 + Ac3H11_384 0.11 -1.7 63,455 + Ac3H11_384 0.11 -0.8 63,455 + Ac3H11_384 0.11 -3.1 63,456 - Ac3H11_384 0.11 -3.0 63,456 - Ac3H11_384 0.11 +1.3 63,456 - Ac3H11_384 0.11 +0.6 63,456 - Ac3H11_384 0.11 -2.3 63,605 + Ac3H11_384 0.25 +0.1 63,605 + Ac3H11_384 0.25 +0.6 63,742 + Ac3H11_384 0.38 -0.0 63,742 + Ac3H11_384 0.38 -2.1 63,742 + Ac3H11_384 0.38 +0.6 63,742 + Ac3H11_384 0.38 -0.5 63,743 - Ac3H11_384 0.38 -1.3 63,743 - Ac3H11_384 0.38 +1.7 63,743 - -0.0 63,743 - Ac3H11_384 0.38 -1.0 64,036 + Ac3H11_384 0.66 -0.8 64,140 - Ac3H11_384 0.76 -2.0 64,140 - Ac3H11_384 0.76 +0.1 64,277 + Ac3H11_384 0.89 -0.6 64,277 + Ac3H11_384 0.89 +1.3 64,277 + Ac3H11_384 0.89 -0.0 64,277 + Ac3H11_384 0.89 -2.8 64,278 - Ac3H11_384 0.90 +3.1 64,278 - Ac3H11_384 0.90 -0.5 64,278 - Ac3H11_384 0.90 -0.2 64,295 + +1.4 64,295 + +1.0 64,296 - +0.6 64,296 - +0.1 64,296 - +0.4 64,412 - -1.6 64,520 + Ac3H11_385 0.10 +2.0 64,520 + Ac3H11_385 0.10 -0.0 64,520 + Ac3H11_385 0.10 -0.6 64,521 - Ac3H11_385 0.10 -0.3 64,569 + Ac3H11_385 0.19 -0.3 64,569 + Ac3H11_385 0.19 -1.3 64,569 + Ac3H11_385 0.19 +0.2 64,569 + Ac3H11_385 0.19 +1.1 64,570 - Ac3H11_385 0.19 +1.0 64,570 - Ac3H11_385 0.19 +1.7 64,570 - Ac3H11_385 0.19 -1.0 64,684 + Ac3H11_385 0.39 +0.6 64,749 + Ac3H11_385 0.51 +0.9 64,749 + Ac3H11_385 0.51 -0.4 64,749 + Ac3H11_385 0.51 -0.1 64,750 - Ac3H11_385 0.51 +0.8 64,750 - Ac3H11_385 0.51 +0.3 64,750 - Ac3H11_385 0.51 -0.7 64,790 + Ac3H11_385 0.58 -0.4 64,790 + Ac3H11_385 0.58 -1.7 64,790 + Ac3H11_385 0.58 -0.3 64,791 - Ac3H11_385 0.58 -2.5 64,851 + Ac3H11_385 0.69 -1.2 64,851 + Ac3H11_385 0.69 -0.1 64,852 - Ac3H11_385 0.69 +0.7 64,852 - Ac3H11_385 0.69 -0.6 64,852 - Ac3H11_385 0.69 -0.7 64,852 - Ac3H11_385 0.69 -0.9 64,914 + Ac3H11_385 0.80 +0.3 64,914 + Ac3H11_385 0.80 -2.5 64,914 + Ac3H11_385 0.80 -0.2 64,914 + Ac3H11_385 0.80 +1.2 64,914 + Ac3H11_385 0.80 -1.9 64,914 + Ac3H11_385 0.80 -2.3 64,914 + Ac3H11_385 0.80 +2.8 64,914 + Ac3H11_385 0.80 -0.1 64,914 + Ac3H11_385 0.80 -1.1 64,914 + Ac3H11_385 0.80 +0.2 64,914 + Ac3H11_385 0.80 +0.5 64,915 - Ac3H11_385 0.81 -0.4 64,915 - Ac3H11_385 0.81 +1.4 64,915 - Ac3H11_385 0.81 +1.4 64,915 - Ac3H11_385 0.81 -1.7 64,915 - Ac3H11_385 0.81 +0.1 64,915 - Ac3H11_385 0.81 +1.1 64,915 - Ac3H11_385 0.81 -0.8 64,915 - Ac3H11_385 0.81 -2.4 64,915 - Ac3H11_385 0.81 -1.1 64,915 - Ac3H11_385 0.81 +0.3 64,915 - Ac3H11_385 0.81 -0.6 64,915 - Ac3H11_385 0.81 +1.8 64,915 - Ac3H11_385 0.81 +0.8 65,133 - +0.1 65,133 - +0.5 65,271 + +2.7 65,272 - +1.0 65,355 - Ac3H11_386 0.13 -1.8
Or see this region's nucleotide sequence