Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3813

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3812 and Ac3H11_3813 are separated by 4 nucleotidesAc3H11_3813 and Ac3H11_3814 are separated by 74 nucleotides Ac3H11_3812 - Hydrogen peroxide-inducible genes activator, at 27,029 to 27,991 _3812 Ac3H11_3813 - FIG074102: hypothetical protein, at 27,996 to 29,054 _3813 Ac3H11_3814 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 29,129 to 30,220 _3814 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 26.996 kb on + strandat 27.030 kb on + strandat 27.030 kb on + strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.127 kb on + strand, within Ac3H11_3812at 27.127 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.966 kb on + strandat 28.105 kb on + strand, within Ac3H11_3813at 28.148 kb on - strand, within Ac3H11_3813at 28.243 kb on + strand, within Ac3H11_3813at 28.244 kb on - strand, within Ac3H11_3813at 28.306 kb on + strand, within Ac3H11_3813at 28.306 kb on + strand, within Ac3H11_3813at 28.307 kb on - strand, within Ac3H11_3813at 28.307 kb on - strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.646 kb on + strand, within Ac3H11_3813at 28.647 kb on - strand, within Ac3H11_3813at 28.647 kb on - strand, within Ac3H11_3813at 28.660 kb on + strand, within Ac3H11_3813at 28.661 kb on - strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.686 kb on - strand, within Ac3H11_3813at 28.686 kb on - strand, within Ac3H11_3813at 28.709 kb on + strand, within Ac3H11_3813at 28.709 kb on + strand, within Ac3H11_3813at 28.710 kb on - strand, within Ac3H11_3813at 28.710 kb on - strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.921 kb on + strand, within Ac3H11_3813at 28.921 kb on + strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813at 29.011 kb on + strandat 29.011 kb on + strandat 29.011 kb on + strandat 29.012 kb on - strandat 29.012 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
26,996 + +0.1
27,030 + -0.3
27,030 + +1.3
27,031 - +1.1
27,031 - -0.4
27,031 - -0.6
27,031 - -2.1
27,127 + Ac3H11_3812 0.10 -0.1
27,127 + Ac3H11_3812 0.10 +1.3
27,489 + Ac3H11_3812 0.48 -0.8
27,489 + Ac3H11_3812 0.48 -0.2
27,489 + Ac3H11_3812 0.48 +0.6
27,489 + Ac3H11_3812 0.48 -0.1
27,489 + Ac3H11_3812 0.48 -0.0
27,489 + Ac3H11_3812 0.48 -2.3
27,501 + Ac3H11_3812 0.49 +1.8
27,501 + Ac3H11_3812 0.49 +0.2
27,501 + Ac3H11_3812 0.49 +1.8
27,502 - Ac3H11_3812 0.49 +1.3
27,502 - Ac3H11_3812 0.49 -1.6
27,502 - Ac3H11_3812 0.49 -3.1
27,502 - Ac3H11_3812 0.49 +0.6
27,552 + Ac3H11_3812 0.54 +0.6
27,552 + Ac3H11_3812 0.54 +0.3
27,552 + Ac3H11_3812 0.54 +0.5
27,966 + -0.9
28,105 + Ac3H11_3813 0.10 -0.9
28,148 - Ac3H11_3813 0.14 -2.1
28,243 + Ac3H11_3813 0.23 -0.3
28,244 - Ac3H11_3813 0.23 +0.7
28,306 + Ac3H11_3813 0.29 +0.2
28,306 + Ac3H11_3813 0.29 -0.2
28,307 - Ac3H11_3813 0.29 +0.1
28,307 - Ac3H11_3813 0.29 +0.4
28,327 + Ac3H11_3813 0.31 -2.8
28,327 + Ac3H11_3813 0.31 +0.8
28,327 + Ac3H11_3813 0.31 -2.2
28,327 + Ac3H11_3813 0.31 +0.5
28,328 - Ac3H11_3813 0.31 -0.4
28,328 - Ac3H11_3813 0.31 +1.0
28,328 - Ac3H11_3813 0.31 -3.4
28,328 - Ac3H11_3813 0.31 -0.1
28,328 - Ac3H11_3813 0.31 +0.3
28,335 + Ac3H11_3813 0.32 -1.1
28,335 + Ac3H11_3813 0.32 +0.8
28,335 + Ac3H11_3813 0.32 -1.7
28,335 + Ac3H11_3813 0.32 -1.9
28,335 + Ac3H11_3813 0.32 +0.8
28,336 - Ac3H11_3813 0.32 -1.8
28,336 - Ac3H11_3813 0.32 -3.8
28,336 - Ac3H11_3813 0.32 +0.6
28,646 + Ac3H11_3813 0.61 +2.4
28,647 - Ac3H11_3813 0.61 -1.2
28,647 - Ac3H11_3813 0.61 +1.2
28,660 + Ac3H11_3813 0.63 -2.1
28,661 - Ac3H11_3813 0.63 +0.6
28,685 + Ac3H11_3813 0.65 +0.0
28,685 + Ac3H11_3813 0.65 -0.0
28,685 + Ac3H11_3813 0.65 -0.0
28,685 + Ac3H11_3813 0.65 +1.1
28,686 - Ac3H11_3813 0.65 -0.2
28,686 - Ac3H11_3813 0.65 -0.3
28,709 + Ac3H11_3813 0.67 -0.5
28,709 + Ac3H11_3813 0.67 -2.3
28,710 - Ac3H11_3813 0.67 -1.1
28,710 - Ac3H11_3813 0.67 +0.3
28,786 + Ac3H11_3813 0.75 +2.3
28,786 + Ac3H11_3813 0.75 +0.8
28,786 + Ac3H11_3813 0.75 -1.6
28,786 + Ac3H11_3813 0.75 +0.5
28,786 + Ac3H11_3813 0.75 -0.3
28,786 + Ac3H11_3813 0.75 -3.2
28,786 + Ac3H11_3813 0.75 -0.6
28,786 + Ac3H11_3813 0.75 -0.3
28,787 - Ac3H11_3813 0.75 +0.6
28,787 - Ac3H11_3813 0.75 +0.0
28,787 - Ac3H11_3813 0.75 +0.6
28,787 - Ac3H11_3813 0.75 +0.2
28,787 - Ac3H11_3813 0.75 -1.8
28,787 - Ac3H11_3813 0.75 -0.3
28,787 - Ac3H11_3813 0.75 -0.4
28,787 - Ac3H11_3813 0.75 -1.2
28,787 - Ac3H11_3813 0.75 -2.4
28,921 + Ac3H11_3813 0.87 -0.5
28,921 + Ac3H11_3813 0.87 +2.1
28,922 - Ac3H11_3813 0.87 -1.6
28,922 - Ac3H11_3813 0.87 -1.7
28,922 - Ac3H11_3813 0.87 +2.7
29,011 + -4.4
29,011 + +0.2
29,011 + +1.1
29,012 - -1.4
29,012 - +0.4

Or see this region's nucleotide sequence