Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_379 and Ac3H11_380 are separated by 244 nucleotides Ac3H11_380 and Ac3H11_381 are separated by 521 nucleotides Ac3H11_381 and Ac3H11_566 are separated by 178 nucleotides Ac3H11_566 and Ac3H11_382 are separated by 194 nucleotides
Ac3H11_379 - hypothetical protein, at 56,409 to 56,615
_379
Ac3H11_380 - hypothetical protein, at 56,860 to 57,036
_380
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Ac3H11_566 - tRNA-Arg-TCT, at 58,984 to 59,057
_566
Ac3H11_382 - TrkA-N:Sodium/hydrogen exchanger, at 59,252 to 60,991
_382
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.617 kb on - strand at 56.617 kb on - strand at 56.746 kb on + strand at 56.785 kb on + strand at 56.786 kb on - strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.825 kb on + strand at 56.825 kb on + strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.862 kb on - strand at 56.897 kb on + strand, within Ac3H11_380 at 56.897 kb on + strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.905 kb on + strand, within Ac3H11_380 at 56.906 kb on - strand, within Ac3H11_380 at 56.993 kb on + strand, within Ac3H11_380 at 57.049 kb on + strand at 57.049 kb on + strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.144 kb on + strand at 57.144 kb on + strand at 57.145 kb on - strand at 57.145 kb on - strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.170 kb on + strand at 57.171 kb on - strand at 57.195 kb on - strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.274 kb on - strand at 57.274 kb on - strand at 57.613 kb on + strand at 57.614 kb on - strand at 57.614 kb on - strand at 57.670 kb on + strand at 57.670 kb on + strand at 57.671 kb on - strand at 57.671 kb on - strand at 57.757 kb on - strand, within Ac3H11_381 at 58.018 kb on - strand, within Ac3H11_381 at 58.018 kb on - strand, within Ac3H11_381 at 58.132 kb on + strand, within Ac3H11_381 at 58.132 kb on + strand, within Ac3H11_381 at 58.132 kb on + strand, within Ac3H11_381 at 58.132 kb on + strand, within Ac3H11_381 at 58.133 kb on - strand, within Ac3H11_381 at 58.133 kb on - strand, within Ac3H11_381 at 58.149 kb on + strand, within Ac3H11_381 at 58.150 kb on - strand, within Ac3H11_381 at 58.205 kb on + strand, within Ac3H11_381 at 58.206 kb on - strand, within Ac3H11_381 at 58.336 kb on - strand, within Ac3H11_381 at 58.336 kb on - strand, within Ac3H11_381 at 58.336 kb on - strand, within Ac3H11_381 at 58.399 kb on + strand, within Ac3H11_381 at 58.400 kb on - strand, within Ac3H11_381 at 58.429 kb on - strand, within Ac3H11_381 at 58.429 kb on - strand, within Ac3H11_381 at 58.444 kb on + strand, within Ac3H11_381 at 58.445 kb on - strand, within Ac3H11_381 at 58.518 kb on + strand, within Ac3H11_381 at 58.518 kb on + strand, within Ac3H11_381 at 58.519 kb on - strand, within Ac3H11_381 at 58.519 kb on - strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.633 kb on + strand, within Ac3H11_381 at 58.675 kb on + strand, within Ac3H11_381 at 58.675 kb on + strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.718 kb on - strand at 58.718 kb on - strand at 58.782 kb on + strand at 58.782 kb on + strand at 58.796 kb on + strand at 58.823 kb on + strand at 58.877 kb on + strand at 58.877 kb on + strand at 58.877 kb on + strand at 58.878 kb on - strand at 58.933 kb on - strand at 58.977 kb on + strand at 58.977 kb on + strand at 58.978 kb on - strand at 59.081 kb on - strand at 59.197 kb on - strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.199 kb on - strand at 59.199 kb on - strand at 59.357 kb on + strand at 59.560 kb on + strand, within Ac3H11_382 at 59.560 kb on + strand, within Ac3H11_382 at 59.561 kb on - strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 56,616 + +0.8 56,616 + +2.0 56,616 + +1.5 56,616 + -2.9 56,616 + -0.5 56,616 + -2.0 56,616 + +0.3 56,617 - -4.0 56,617 - +1.4 56,746 + +0.4 56,785 + +0.9 56,786 - +0.4 56,795 - -0.4 56,795 - -1.0 56,825 + -0.3 56,825 + -1.4 56,826 - +0.7 56,826 - -0.1 56,826 - +1.3 56,862 - -0.2 56,897 + Ac3H11_380 0.21 -2.1 56,897 + Ac3H11_380 0.21 -0.0 56,898 - Ac3H11_380 0.21 -0.6 56,898 - Ac3H11_380 0.21 -2.0 56,905 + Ac3H11_380 0.25 -0.9 56,906 - Ac3H11_380 0.26 +1.3 56,993 + Ac3H11_380 0.75 +1.2 57,049 + +1.0 57,049 + +0.6 57,050 - -0.4 57,050 - +2.6 57,050 - +0.5 57,103 + +0.2 57,103 + -0.3 57,103 + +0.7 57,144 + -2.4 57,144 + -1.4 57,145 - +0.4 57,145 - -1.3 57,148 + -3.1 57,148 + -0.9 57,148 + +1.0 57,148 + +0.3 57,148 + -0.6 57,148 + -0.9 57,148 + -0.9 57,148 + -3.2 57,148 + +0.0 57,148 + +0.0 57,148 + -1.9 57,148 + -0.9 57,149 - -0.1 57,149 - -1.2 57,149 - -1.8 57,149 - -0.7 57,149 - -1.3 57,149 - +0.2 57,149 - -0.3 57,149 - +1.7 57,149 - +1.1 57,149 - -3.7 57,170 + -2.8 57,171 - -0.4 57,195 - +0.6 57,273 + +0.2 57,273 + -0.2 57,273 + +0.4 57,273 + +0.7 57,274 - -0.2 57,274 - -0.8 57,613 + -0.4 57,614 - -2.5 57,614 - +1.0 57,670 + +1.2 57,670 + -1.1 57,671 - +0.1 57,671 - +0.7 57,757 - Ac3H11_381 0.16 +0.5 58,018 - Ac3H11_381 0.37 -0.1 58,018 - Ac3H11_381 0.37 +1.4 58,132 + Ac3H11_381 0.46 +2.1 58,132 + Ac3H11_381 0.46 -3.1 58,132 + Ac3H11_381 0.46 +1.8 58,132 + Ac3H11_381 0.46 +1.7 58,133 - Ac3H11_381 0.46 -1.3 58,133 - Ac3H11_381 0.46 +0.9 58,149 + Ac3H11_381 0.47 -0.1 58,150 - Ac3H11_381 0.47 -2.3 58,205 + Ac3H11_381 0.52 -0.7 58,206 - Ac3H11_381 0.52 +0.3 58,336 - Ac3H11_381 0.62 -0.6 58,336 - Ac3H11_381 0.62 +0.2 58,336 - Ac3H11_381 0.62 +1.3 58,399 + Ac3H11_381 0.67 -0.1 58,400 - Ac3H11_381 0.67 +0.4 58,429 - Ac3H11_381 0.70 +0.6 58,429 - Ac3H11_381 0.70 -0.2 58,444 + Ac3H11_381 0.71 +1.3 58,445 - Ac3H11_381 0.71 +1.6 58,518 + Ac3H11_381 0.77 -0.5 58,518 + Ac3H11_381 0.77 +0.6 58,519 - Ac3H11_381 0.77 -0.5 58,519 - Ac3H11_381 0.77 +1.1 58,563 + Ac3H11_381 0.81 +0.2 58,563 + Ac3H11_381 0.81 -2.4 58,563 + Ac3H11_381 0.81 +1.9 58,564 - Ac3H11_381 0.81 +0.0 58,564 - Ac3H11_381 0.81 -1.4 58,564 - Ac3H11_381 0.81 -0.4 58,564 - Ac3H11_381 0.81 -0.9 58,564 - Ac3H11_381 0.81 +0.1 58,564 - Ac3H11_381 0.81 -0.4 58,564 - Ac3H11_381 0.81 -1.6 58,564 - Ac3H11_381 0.81 -2.2 58,633 + Ac3H11_381 0.86 -1.8 58,675 + Ac3H11_381 0.90 -0.8 58,675 + Ac3H11_381 0.90 -0.0 58,676 - Ac3H11_381 0.90 -0.1 58,676 - Ac3H11_381 0.90 -1.1 58,676 - Ac3H11_381 0.90 +1.2 58,676 - Ac3H11_381 0.90 -2.8 58,690 + +1.3 58,690 + -0.6 58,690 + -0.3 58,691 - -0.7 58,691 - +0.3 58,691 - -2.6 58,691 - +0.4 58,691 - +0.9 58,691 - -2.0 58,691 - -1.4 58,718 - +2.0 58,718 - -2.5 58,782 + +0.2 58,782 + +0.7 58,796 + +1.2 58,823 + +0.0 58,877 + +1.6 58,877 + +0.9 58,877 + +1.3 58,878 - +0.7 58,933 - -0.0 58,977 + -2.1 58,977 + +0.3 58,978 - -1.3 59,081 - -0.8 59,197 - -1.6 59,198 + -1.7 59,198 + +1.2 59,198 + -1.6 59,198 + +0.8 59,199 - +0.3 59,199 - +1.1 59,357 + +0.6 59,560 + Ac3H11_382 0.18 +1.8 59,560 + Ac3H11_382 0.18 +1.0 59,561 - Ac3H11_382 0.18 +0.7 59,684 + Ac3H11_382 0.25 -0.0 59,684 + Ac3H11_382 0.25 -0.6 59,684 + Ac3H11_382 0.25 -0.9 59,684 + Ac3H11_382 0.25 -1.2 59,684 + Ac3H11_382 0.25 +1.6 59,684 + Ac3H11_382 0.25 +2.2 59,684 + Ac3H11_382 0.25 +0.8 59,685 - Ac3H11_382 0.25 +1.0 59,685 - Ac3H11_382 0.25 -1.0 59,685 - Ac3H11_382 0.25 -0.7 59,685 - Ac3H11_382 0.25 -1.3 59,685 - Ac3H11_382 0.25 -0.2 59,685 - Ac3H11_382 0.25 -0.3 59,685 - Ac3H11_382 0.25 +0.6
Or see this region's nucleotide sequence