Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3800 and Ac3H11_3801 are separated by 8 nucleotides Ac3H11_3801 and Ac3H11_3802 overlap by 4 nucleotides Ac3H11_3802 and Ac3H11_3803 are separated by 23 nucleotides
Ac3H11_3800 - Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2), at 11,386 to 12,600
_3800
Ac3H11_3801 - putative lipoprotein, at 12,609 to 12,848
_3801
Ac3H11_3802 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 12,845 to 13,462
_3802
Ac3H11_3803 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 13,486 to 16,455
_3803
Position (kb) 12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.943 kb on - strand, within Ac3H11_3800 at 11.943 kb on - strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.248 kb on + strand at 12.326 kb on + strand, within Ac3H11_3800 at 12.326 kb on + strand, within Ac3H11_3800 at 12.327 kb on - strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.631 kb on + strand at 12.631 kb on + strand at 12.631 kb on + strand at 12.631 kb on + strand at 12.647 kb on - strand, within Ac3H11_3801 at 12.647 kb on - strand, within Ac3H11_3801 at 12.736 kb on + strand, within Ac3H11_3801 at 12.737 kb on - strand, within Ac3H11_3801 at 12.889 kb on - strand at 12.889 kb on - strand at 12.889 kb on - strand at 12.889 kb on - strand at 13.050 kb on + strand, within Ac3H11_3802 at 13.051 kb on - strand, within Ac3H11_3802 at 13.051 kb on - strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.189 kb on - strand, within Ac3H11_3802 at 13.245 kb on + strand, within Ac3H11_3802 at 13.245 kb on + strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.548 kb on - strand at 13.548 kb on - strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.610 kb on + strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.613 kb on + strand at 13.613 kb on + strand at 13.614 kb on - strand at 13.614 kb on - strand at 13.614 kb on - strand at 13.863 kb on - strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.995 kb on - strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.417 kb on + strand, within Ac3H11_3803 at 14.441 kb on + strand, within Ac3H11_3803 at 14.442 kb on - strand, within Ac3H11_3803 at 14.442 kb on - strand, within Ac3H11_3803
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 11,942 + Ac3H11_3800 0.46 -0.5 11,942 + Ac3H11_3800 0.46 +1.0 11,942 + Ac3H11_3800 0.46 -1.1 11,942 + Ac3H11_3800 0.46 -0.5 11,942 + Ac3H11_3800 0.46 +1.1 11,942 + Ac3H11_3800 0.46 -2.8 11,942 + Ac3H11_3800 0.46 -0.3 11,943 - Ac3H11_3800 0.46 -3.3 11,943 - Ac3H11_3800 0.46 -0.9 12,146 + Ac3H11_3800 0.63 -0.8 12,146 + Ac3H11_3800 0.63 +0.6 12,146 + Ac3H11_3800 0.63 +0.9 12,248 + -0.0 12,326 + Ac3H11_3800 0.77 +1.1 12,326 + Ac3H11_3800 0.77 +0.3 12,327 - Ac3H11_3800 0.77 +0.8 12,416 + Ac3H11_3800 0.85 +0.9 12,416 + Ac3H11_3800 0.85 +1.0 12,416 + Ac3H11_3800 0.85 +1.2 12,416 + Ac3H11_3800 0.85 +0.5 12,416 + Ac3H11_3800 0.85 +0.1 12,416 + Ac3H11_3800 0.85 -1.4 12,416 + Ac3H11_3800 0.85 -0.3 12,417 - Ac3H11_3800 0.85 -1.2 12,417 - Ac3H11_3800 0.85 +0.8 12,417 - Ac3H11_3800 0.85 -3.4 12,417 - Ac3H11_3800 0.85 -0.8 12,417 - Ac3H11_3800 0.85 +0.2 12,417 - Ac3H11_3800 0.85 +0.2 12,631 + -3.2 12,631 + -0.5 12,631 + +1.2 12,631 + +1.0 12,647 - Ac3H11_3801 0.16 -0.3 12,647 - Ac3H11_3801 0.16 -1.0 12,736 + Ac3H11_3801 0.53 -2.6 12,737 - Ac3H11_3801 0.53 -0.6 12,889 - +0.6 12,889 - -0.4 12,889 - +0.6 12,889 - +0.2 13,050 + Ac3H11_3802 0.33 +1.8 13,051 - Ac3H11_3802 0.33 -0.4 13,051 - Ac3H11_3802 0.33 -0.4 13,179 + Ac3H11_3802 0.54 -0.6 13,179 + Ac3H11_3802 0.54 -0.0 13,179 + Ac3H11_3802 0.54 -0.2 13,180 - Ac3H11_3802 0.54 +0.3 13,180 - Ac3H11_3802 0.54 +0.6 13,180 - Ac3H11_3802 0.54 -2.8 13,188 + Ac3H11_3802 0.56 +1.1 13,188 + Ac3H11_3802 0.56 +0.9 13,188 + Ac3H11_3802 0.56 +0.6 13,189 - Ac3H11_3802 0.56 +0.8 13,245 + Ac3H11_3802 0.65 +0.6 13,245 + Ac3H11_3802 0.65 -0.2 13,246 - Ac3H11_3802 0.65 +0.3 13,246 - Ac3H11_3802 0.65 -1.2 13,246 - Ac3H11_3802 0.65 +4.1 13,548 - -0.5 13,548 - +0.6 13,553 + -0.5 13,553 + +0.6 13,553 + -0.6 13,553 + -0.1 13,553 + +1.5 13,553 + +2.6 13,553 + +1.3 13,553 + +1.8 13,554 - +0.5 13,554 - -3.9 13,554 - -1.8 13,554 - -1.4 13,554 - +0.3 13,554 - -0.6 13,554 - -3.4 13,554 - -0.1 13,554 - -1.9 13,554 - +0.4 13,554 - -1.2 13,554 - -0.4 13,554 - -2.6 13,610 + -0.9 13,611 - -2.7 13,611 - +1.4 13,611 - -2.3 13,611 - +0.1 13,613 + -0.4 13,613 + -0.0 13,614 - +0.6 13,614 - -0.9 13,614 - -0.7 13,863 - Ac3H11_3803 0.13 -0.8 13,946 + Ac3H11_3803 0.15 -2.8 13,946 + Ac3H11_3803 0.15 -3.6 13,946 + Ac3H11_3803 0.15 -1.6 13,946 + Ac3H11_3803 0.15 +1.4 13,946 + Ac3H11_3803 0.15 -0.3 13,946 + Ac3H11_3803 0.15 -0.0 13,946 + Ac3H11_3803 0.15 +0.7 13,946 + Ac3H11_3803 0.15 +0.3 13,947 - Ac3H11_3803 0.16 +0.6 13,947 - Ac3H11_3803 0.16 +0.6 13,947 - Ac3H11_3803 0.16 -1.2 13,947 - Ac3H11_3803 0.16 -0.6 13,995 - Ac3H11_3803 0.17 -0.4 14,024 + Ac3H11_3803 0.18 +1.6 14,024 + Ac3H11_3803 0.18 +0.3 14,024 + Ac3H11_3803 0.18 +0.4 14,024 + Ac3H11_3803 0.18 +1.4 14,024 + Ac3H11_3803 0.18 +0.1 14,025 - Ac3H11_3803 0.18 +0.6 14,025 - Ac3H11_3803 0.18 +0.2 14,025 - Ac3H11_3803 0.18 -0.2 14,025 - Ac3H11_3803 0.18 +1.5 14,025 - Ac3H11_3803 0.18 -1.0 14,375 + Ac3H11_3803 0.30 +0.4 14,375 + Ac3H11_3803 0.30 -1.4 14,375 + Ac3H11_3803 0.30 +1.9 14,375 + Ac3H11_3803 0.30 +1.2 14,376 - Ac3H11_3803 0.30 +1.4 14,376 - Ac3H11_3803 0.30 +0.6 14,376 - Ac3H11_3803 0.30 +0.9 14,376 - Ac3H11_3803 0.30 -0.4 14,417 + Ac3H11_3803 0.31 -2.4 14,441 + Ac3H11_3803 0.32 +1.0 14,442 - Ac3H11_3803 0.32 -0.5 14,442 - Ac3H11_3803 0.32 -0.7
Or see this region's nucleotide sequence