Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3542

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3541 and Ac3H11_3542 are separated by 90 nucleotidesAc3H11_3542 and Ac3H11_3543 overlap by 15 nucleotidesAc3H11_3543 and Ac3H11_3544 are separated by 95 nucleotides Ac3H11_3541 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 90,057 to 90,944 _3541 Ac3H11_3542 - Valyl-tRNA synthetase (EC 6.1.1.9), at 91,035 to 93,932 _3542 Ac3H11_3543 - hypothetical protein, at 93,918 to 94,127 _3543 Ac3H11_3544 - FIG00349188: hypothetical protein, at 94,223 to 96,109 _3544 Position (kb) 91 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.058 kb on + strandat 90.058 kb on + strandat 90.059 kb on - strandat 94.091 kb on + strand, within Ac3H11_3543at 94.092 kb on - strand, within Ac3H11_3543at 94.129 kb on - strandat 94.202 kb on + strandat 94.202 kb on + strandat 94.202 kb on + strandat 94.203 kb on - strandat 94.203 kb on - strandat 94.203 kb on - strandat 94.203 kb on - strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.204 kb on + strandat 94.205 kb on - strandat 94.205 kb on - strandat 94.205 kb on - strandat 94.205 kb on - strandat 94.205 kb on - strandat 94.205 kb on - strandat 94.325 kb on + strandat 94.325 kb on + strandat 94.326 kb on - strandat 94.427 kb on + strand, within Ac3H11_3544at 94.427 kb on + strand, within Ac3H11_3544at 94.427 kb on + strand, within Ac3H11_3544at 94.427 kb on + strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.428 kb on - strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.637 kb on + strand, within Ac3H11_3544at 94.638 kb on - strand, within Ac3H11_3544at 94.638 kb on - strand, within Ac3H11_3544at 94.638 kb on - strand, within Ac3H11_3544at 94.638 kb on - strand, within Ac3H11_3544at 94.638 kb on - strand, within Ac3H11_3544at 94.757 kb on + strand, within Ac3H11_3544at 94.757 kb on + strand, within Ac3H11_3544at 94.757 kb on + strand, within Ac3H11_3544at 94.757 kb on + strand, within Ac3H11_3544at 94.757 kb on + strand, within Ac3H11_3544at 94.758 kb on - strand, within Ac3H11_3544

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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90,058 + +1.6
90,058 + +0.3
90,059 - -3.0
94,091 + Ac3H11_3543 0.82 -2.2
94,092 - Ac3H11_3543 0.83 -0.5
94,129 - -0.5
94,202 + -0.2
94,202 + +1.1
94,202 + +1.7
94,203 - -2.0
94,203 - +0.0
94,203 - -1.2
94,203 - +2.1
94,204 + +2.4
94,204 + +0.2
94,204 + +0.9
94,204 + +1.1
94,204 + +1.4
94,204 + +1.7
94,204 + -2.0
94,204 + -0.5
94,205 - -2.0
94,205 - +0.6
94,205 - -3.4
94,205 - +0.3
94,205 - +0.2
94,205 - +0.9
94,325 + +1.1
94,325 + -0.1
94,326 - +0.5
94,427 + Ac3H11_3544 0.11 +0.7
94,427 + Ac3H11_3544 0.11 -0.3
94,427 + Ac3H11_3544 0.11 -0.3
94,427 + Ac3H11_3544 0.11 +1.2
94,428 - Ac3H11_3544 0.11 -1.0
94,428 - Ac3H11_3544 0.11 +0.2
94,428 - Ac3H11_3544 0.11 +0.9
94,428 - Ac3H11_3544 0.11 -1.8
94,428 - Ac3H11_3544 0.11 +0.3
94,428 - Ac3H11_3544 0.11 -0.3
94,428 - Ac3H11_3544 0.11 +0.6
94,637 + Ac3H11_3544 0.22 -3.7
94,637 + Ac3H11_3544 0.22 -3.2
94,637 + Ac3H11_3544 0.22 +1.3
94,637 + Ac3H11_3544 0.22 -2.1
94,637 + Ac3H11_3544 0.22 +0.2
94,637 + Ac3H11_3544 0.22 +0.8
94,638 - Ac3H11_3544 0.22 -1.1
94,638 - Ac3H11_3544 0.22 +0.8
94,638 - Ac3H11_3544 0.22 -1.7
94,638 - Ac3H11_3544 0.22 +0.5
94,638 - Ac3H11_3544 0.22 -2.5
94,757 + Ac3H11_3544 0.28 +0.0
94,757 + Ac3H11_3544 0.28 -0.1
94,757 + Ac3H11_3544 0.28 -3.6
94,757 + Ac3H11_3544 0.28 +0.8
94,757 + Ac3H11_3544 0.28 +1.5
94,758 - Ac3H11_3544 0.28 -1.3

Or see this region's nucleotide sequence