Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3464 and Ac3H11_3465 overlap by 4 nucleotides Ac3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides Ac3H11_3466 and Ac3H11_3467 are separated by 3 nucleotides Ac3H11_3467 and Ac3H11_3468 are separated by 23 nucleotides Ac3H11_3468 and Ac3H11_3469 overlap by 4 nucleotides
Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512
_3464
Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021
_3465
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Ac3H11_3467 - hypothetical protein, at 20,160 to 20,420
_3467
Ac3H11_3468 - COG1896: Predicted hydrolases of HD superfamily, at 20,444 to 21,097
_3468
Ac3H11_3469 - hypothetical protein, at 21,094 to 21,453
_3469
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.057 kb on + strand at 17.058 kb on - strand at 17.058 kb on - strand at 17.194 kb on + strand, within Ac3H11_3464 at 17.194 kb on + strand, within Ac3H11_3464 at 17.371 kb on - strand, within Ac3H11_3464 at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.792 kb on + strand, within Ac3H11_3465 at 18.027 kb on - strand at 18.043 kb on + strand at 18.043 kb on + strand at 18.131 kb on + strand at 18.543 kb on + strand, within Ac3H11_3466 at 18.543 kb on + strand, within Ac3H11_3466 at 18.543 kb on + strand, within Ac3H11_3466 at 18.543 kb on + strand, within Ac3H11_3466 at 18.544 kb on - strand, within Ac3H11_3466 at 18.688 kb on + strand, within Ac3H11_3466 at 18.790 kb on + strand, within Ac3H11_3466 at 18.791 kb on - strand, within Ac3H11_3466 at 18.900 kb on + strand, within Ac3H11_3466 at 19.015 kb on + strand, within Ac3H11_3466 at 19.015 kb on + strand, within Ac3H11_3466 at 19.015 kb on + strand, within Ac3H11_3466 at 19.016 kb on - strand, within Ac3H11_3466 at 19.016 kb on - strand, within Ac3H11_3466 at 19.118 kb on - strand, within Ac3H11_3466 at 19.118 kb on - strand, within Ac3H11_3466 at 19.294 kb on + strand, within Ac3H11_3466 at 19.294 kb on + strand, within Ac3H11_3466 at 19.294 kb on + strand, within Ac3H11_3466 at 19.295 kb on - strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.576 kb on - strand, within Ac3H11_3466 at 19.576 kb on - strand, within Ac3H11_3466 at 19.831 kb on + strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.906 kb on - strand, within Ac3H11_3466 at 19.906 kb on - strand, within Ac3H11_3466 at 20.020 kb on + strand at 20.072 kb on - strand at 20.161 kb on + strand at 20.161 kb on + strand at 20.260 kb on + strand, within Ac3H11_3467 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.087 kb on + strand at 21.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 17,057 + -2.2 17,058 - +0.0 17,058 - -0.7 17,194 + Ac3H11_3464 0.19 -1.2 17,194 + Ac3H11_3464 0.19 -2.0 17,371 - Ac3H11_3464 0.64 +0.2 17,551 + +0.0 17,551 + -2.2 17,551 + -0.4 17,551 + -1.8 17,551 + -0.9 17,552 - +0.6 17,611 + Ac3H11_3465 0.20 +0.1 17,611 + Ac3H11_3465 0.20 -1.8 17,611 + Ac3H11_3465 0.20 +1.1 17,611 + Ac3H11_3465 0.20 -0.1 17,611 + Ac3H11_3465 0.20 -1.9 17,612 - Ac3H11_3465 0.20 +1.2 17,612 - Ac3H11_3465 0.20 +0.2 17,612 - Ac3H11_3465 0.20 +1.4 17,684 + Ac3H11_3465 0.34 -0.6 17,684 + Ac3H11_3465 0.34 -0.5 17,685 - Ac3H11_3465 0.34 -0.2 17,685 - Ac3H11_3465 0.34 +0.4 17,687 + Ac3H11_3465 0.35 +0.9 17,687 + Ac3H11_3465 0.35 +0.8 17,687 + Ac3H11_3465 0.35 +0.6 17,687 + Ac3H11_3465 0.35 +0.0 17,792 + Ac3H11_3465 0.55 +0.7 18,027 - +0.8 18,043 + +0.4 18,043 + -2.0 18,131 + +0.8 18,543 + Ac3H11_3466 0.24 -2.6 18,543 + Ac3H11_3466 0.24 +0.3 18,543 + Ac3H11_3466 0.24 +0.8 18,543 + Ac3H11_3466 0.24 -2.4 18,544 - Ac3H11_3466 0.24 -3.1 18,688 + Ac3H11_3466 0.31 -1.6 18,790 + Ac3H11_3466 0.36 +0.9 18,791 - Ac3H11_3466 0.36 -3.5 18,900 + Ac3H11_3466 0.41 -2.6 19,015 + Ac3H11_3466 0.47 -0.9 19,015 + Ac3H11_3466 0.47 -0.2 19,015 + Ac3H11_3466 0.47 -0.6 19,016 - Ac3H11_3466 0.47 -0.3 19,016 - Ac3H11_3466 0.47 +0.6 19,118 - Ac3H11_3466 0.51 -0.5 19,118 - Ac3H11_3466 0.51 -0.8 19,294 + Ac3H11_3466 0.60 +0.4 19,294 + Ac3H11_3466 0.60 -0.8 19,294 + Ac3H11_3466 0.60 +0.9 19,295 - Ac3H11_3466 0.60 +1.0 19,575 + Ac3H11_3466 0.73 +0.1 19,575 + Ac3H11_3466 0.73 -1.1 19,575 + Ac3H11_3466 0.73 -0.5 19,575 + Ac3H11_3466 0.73 -0.1 19,576 - Ac3H11_3466 0.73 -1.3 19,576 - Ac3H11_3466 0.73 +0.8 19,831 + Ac3H11_3466 0.85 -0.4 19,832 - Ac3H11_3466 0.85 +0.4 19,832 - Ac3H11_3466 0.85 -0.3 19,832 - Ac3H11_3466 0.85 -0.3 19,832 - Ac3H11_3466 0.85 -0.3 19,906 - Ac3H11_3466 0.88 +0.6 19,906 - Ac3H11_3466 0.88 +0.5 20,020 + +1.0 20,072 - -0.2 20,161 + -2.6 20,161 + +1.3 20,260 + Ac3H11_3467 0.38 +1.5 20,510 + Ac3H11_3468 0.10 +1.5 20,510 + Ac3H11_3468 0.10 +0.5 20,510 + Ac3H11_3468 0.10 +0.3 20,661 + Ac3H11_3468 0.33 -1.7 20,661 + Ac3H11_3468 0.33 +1.3 20,705 + Ac3H11_3468 0.40 +0.0 20,705 + Ac3H11_3468 0.40 -0.5 20,705 + Ac3H11_3468 0.40 +3.0 20,732 + Ac3H11_3468 0.44 +0.6 20,732 + Ac3H11_3468 0.44 -0.8 20,847 + Ac3H11_3468 0.62 +0.2 20,847 + Ac3H11_3468 0.62 +0.9 20,847 + Ac3H11_3468 0.62 +1.3 20,847 + Ac3H11_3468 0.62 +0.6 20,847 + Ac3H11_3468 0.62 +0.0 20,847 + Ac3H11_3468 0.62 +0.3 21,021 + Ac3H11_3468 0.88 -3.2 21,021 + Ac3H11_3468 0.88 -0.3 21,054 + -1.7 21,054 + -0.4 21,054 + +1.1 21,054 + -0.5 21,087 + +0.3 21,087 + -1.9
Or see this region's nucleotide sequence