Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3463 and Ac3H11_3464 are separated by 768 nucleotides Ac3H11_3464 and Ac3H11_3465 overlap by 4 nucleotides Ac3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides
Ac3H11_3463 - Phage integrase, at 15,158 to 16,351
_3463
Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512
_3464
Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021
_3465
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Position (kb)
17
18 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.230 kb on - strand, within Ac3H11_3463 at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.246 kb on - strand at 16.246 kb on - strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.326 kb on + strand at 16.326 kb on + strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.568 kb on + strand at 16.568 kb on - strand at 16.577 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.818 kb on + strand at 16.819 kb on - strand at 16.819 kb on - strand at 16.826 kb on + strand at 17.057 kb on + strand at 17.058 kb on - strand at 17.058 kb on - strand at 17.194 kb on + strand, within Ac3H11_3464 at 17.194 kb on + strand, within Ac3H11_3464 at 17.371 kb on - strand, within Ac3H11_3464 at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.792 kb on + strand, within Ac3H11_3465 at 18.027 kb on - strand at 18.043 kb on + strand at 18.043 kb on + strand at 18.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 16,140 + Ac3H11_3463 0.82 -0.1 16,140 + Ac3H11_3463 0.82 +0.8 16,140 + Ac3H11_3463 0.82 -1.6 16,140 + Ac3H11_3463 0.82 +0.1 16,230 - Ac3H11_3463 0.90 +2.2 16,245 + +1.8 16,245 + -1.1 16,245 + +0.1 16,245 + -0.1 16,245 + +0.1 16,246 - +0.5 16,246 - +1.1 16,249 + -1.8 16,249 + +0.9 16,249 + +0.4 16,249 + +2.6 16,249 + -0.7 16,249 + +0.4 16,249 + -1.1 16,250 - +0.1 16,250 - -1.0 16,250 - -1.3 16,250 - -2.6 16,250 - +0.0 16,250 - -1.4 16,250 - +0.8 16,250 - -0.2 16,250 - +0.5 16,250 - -0.5 16,326 + +0.7 16,326 + -0.3 16,327 - +0.0 16,327 - -0.2 16,327 - +0.0 16,327 - +0.5 16,330 + -0.5 16,330 + +0.8 16,330 + -1.2 16,496 + -0.7 16,496 + -1.5 16,496 + -1.6 16,496 + -0.1 16,496 + -1.8 16,496 + -1.0 16,568 + -2.1 16,568 - +1.6 16,577 + +1.0 16,747 + -1.6 16,747 + +0.2 16,747 + +1.5 16,747 + -1.4 16,747 + +1.6 16,747 + -0.9 16,747 + +0.5 16,747 + +0.4 16,747 + +1.0 16,748 - +0.5 16,748 - +0.2 16,748 - +1.2 16,748 - +1.4 16,818 + -1.2 16,819 - -0.0 16,819 - +0.9 16,826 + -0.2 17,057 + -2.2 17,058 - +0.0 17,058 - -0.7 17,194 + Ac3H11_3464 0.19 -1.2 17,194 + Ac3H11_3464 0.19 -2.0 17,371 - Ac3H11_3464 0.64 +0.2 17,551 + +0.0 17,551 + -2.2 17,551 + -0.4 17,551 + -1.8 17,551 + -0.9 17,552 - +0.6 17,611 + Ac3H11_3465 0.20 +0.1 17,611 + Ac3H11_3465 0.20 -1.8 17,611 + Ac3H11_3465 0.20 +1.1 17,611 + Ac3H11_3465 0.20 -0.1 17,611 + Ac3H11_3465 0.20 -1.9 17,612 - Ac3H11_3465 0.20 +1.2 17,612 - Ac3H11_3465 0.20 +0.2 17,612 - Ac3H11_3465 0.20 +1.4 17,684 + Ac3H11_3465 0.34 -0.6 17,684 + Ac3H11_3465 0.34 -0.5 17,685 - Ac3H11_3465 0.34 -0.2 17,685 - Ac3H11_3465 0.34 +0.4 17,687 + Ac3H11_3465 0.35 +0.9 17,687 + Ac3H11_3465 0.35 +0.8 17,687 + Ac3H11_3465 0.35 +0.6 17,687 + Ac3H11_3465 0.35 +0.0 17,792 + Ac3H11_3465 0.55 +0.7 18,027 - +0.8 18,043 + +0.4 18,043 + -2.0 18,131 + +0.8
Or see this region's nucleotide sequence