Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3464

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3463 and Ac3H11_3464 are separated by 768 nucleotidesAc3H11_3464 and Ac3H11_3465 overlap by 4 nucleotidesAc3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides Ac3H11_3463 - Phage integrase, at 15,158 to 16,351 _3463 Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512 _3464 Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021 _3465 Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156 _3466 Position (kb) 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.230 kb on - strand, within Ac3H11_3463at 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.246 kb on - strandat 16.246 kb on - strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.326 kb on + strandat 16.326 kb on + strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.330 kb on + strandat 16.330 kb on + strandat 16.330 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.568 kb on + strandat 16.568 kb on - strandat 16.577 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.818 kb on + strandat 16.819 kb on - strandat 16.819 kb on - strandat 16.826 kb on + strandat 17.057 kb on + strandat 17.058 kb on - strandat 17.058 kb on - strandat 17.194 kb on + strand, within Ac3H11_3464at 17.194 kb on + strand, within Ac3H11_3464at 17.371 kb on - strand, within Ac3H11_3464at 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.552 kb on - strandat 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.684 kb on + strand, within Ac3H11_3465at 17.684 kb on + strand, within Ac3H11_3465at 17.685 kb on - strand, within Ac3H11_3465at 17.685 kb on - strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.792 kb on + strand, within Ac3H11_3465at 18.027 kb on - strandat 18.043 kb on + strandat 18.043 kb on + strandat 18.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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16,140 + Ac3H11_3463 0.82 -0.1
16,140 + Ac3H11_3463 0.82 +0.8
16,140 + Ac3H11_3463 0.82 -1.6
16,140 + Ac3H11_3463 0.82 +0.1
16,230 - Ac3H11_3463 0.90 +2.2
16,245 + +1.8
16,245 + -1.1
16,245 + +0.1
16,245 + -0.1
16,245 + +0.1
16,246 - +0.5
16,246 - +1.1
16,249 + -1.8
16,249 + +0.9
16,249 + +0.4
16,249 + +2.6
16,249 + -0.7
16,249 + +0.4
16,249 + -1.1
16,250 - +0.1
16,250 - -1.0
16,250 - -1.3
16,250 - -2.6
16,250 - +0.0
16,250 - -1.4
16,250 - +0.8
16,250 - -0.2
16,250 - +0.5
16,250 - -0.5
16,326 + +0.7
16,326 + -0.3
16,327 - +0.0
16,327 - -0.2
16,327 - +0.0
16,327 - +0.5
16,330 + -0.5
16,330 + +0.8
16,330 + -1.2
16,496 + -0.7
16,496 + -1.5
16,496 + -1.6
16,496 + -0.1
16,496 + -1.8
16,496 + -1.0
16,568 + -2.1
16,568 - +1.6
16,577 + +1.0
16,747 + -1.6
16,747 + +0.2
16,747 + +1.5
16,747 + -1.4
16,747 + +1.6
16,747 + -0.9
16,747 + +0.5
16,747 + +0.4
16,747 + +1.0
16,748 - +0.5
16,748 - +0.2
16,748 - +1.2
16,748 - +1.4
16,818 + -1.2
16,819 - -0.0
16,819 - +0.9
16,826 + -0.2
17,057 + -2.2
17,058 - +0.0
17,058 - -0.7
17,194 + Ac3H11_3464 0.19 -1.2
17,194 + Ac3H11_3464 0.19 -2.0
17,371 - Ac3H11_3464 0.64 +0.2
17,551 + +0.0
17,551 + -2.2
17,551 + -0.4
17,551 + -1.8
17,551 + -0.9
17,552 - +0.6
17,611 + Ac3H11_3465 0.20 +0.1
17,611 + Ac3H11_3465 0.20 -1.8
17,611 + Ac3H11_3465 0.20 +1.1
17,611 + Ac3H11_3465 0.20 -0.1
17,611 + Ac3H11_3465 0.20 -1.9
17,612 - Ac3H11_3465 0.20 +1.2
17,612 - Ac3H11_3465 0.20 +0.2
17,612 - Ac3H11_3465 0.20 +1.4
17,684 + Ac3H11_3465 0.34 -0.6
17,684 + Ac3H11_3465 0.34 -0.5
17,685 - Ac3H11_3465 0.34 -0.2
17,685 - Ac3H11_3465 0.34 +0.4
17,687 + Ac3H11_3465 0.35 +0.9
17,687 + Ac3H11_3465 0.35 +0.8
17,687 + Ac3H11_3465 0.35 +0.6
17,687 + Ac3H11_3465 0.35 +0.0
17,792 + Ac3H11_3465 0.55 +0.7
18,027 - +0.8
18,043 + +0.4
18,043 + -2.0
18,131 + +0.8

Or see this region's nucleotide sequence