Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2195

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2194 and Ac3H11_2195 are separated by 145 nucleotidesAc3H11_2195 and Ac3H11_2196 are separated by 12 nucleotidesAc3H11_2196 and Ac3H11_2197 are separated by 21 nucleotidesAc3H11_2197 and Ac3H11_2198 are separated by 135 nucleotides Ac3H11_2194 - putative exported protein, at 423,687 to 424,688 _2194 Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528 _2195 Ac3H11_2196 - hypothetical protein, at 426,541 to 427,050 _2196 Ac3H11_2197 - putative membrane protein, at 427,072 to 427,326 _2197 Ac3H11_2198 - hypothetical protein, at 427,462 to 428,148 _2198 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 423.976 kb on - strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.266 kb on + strand, within Ac3H11_2194at 424.267 kb on - strand, within Ac3H11_2194at 425.000 kb on + strandat 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.159 kb on - strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.398 kb on + strand, within Ac3H11_2195at 425.399 kb on - strand, within Ac3H11_2195at 425.443 kb on + strand, within Ac3H11_2195at 425.443 kb on + strand, within Ac3H11_2195at 425.444 kb on - strand, within Ac3H11_2195at 425.444 kb on - strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.530 kb on + strand, within Ac3H11_2195at 425.530 kb on + strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.118 kb on + strand, within Ac3H11_2195at 426.118 kb on + strand, within Ac3H11_2195at 426.119 kb on - strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.221 kb on - strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.526 kb on + strandat 426.526 kb on + strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.542 kb on + strandat 426.542 kb on + strandat 426.543 kb on - strandat 426.647 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 427.051 kb on - strandat 427.100 kb on + strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.167 kb on - strand, within Ac3H11_2197at 427.167 kb on - strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.413 kb on + strandat 427.413 kb on + strandat 427.414 kb on - strandat 427.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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423,976 - Ac3H11_2194 0.29 -0.0
424,026 + Ac3H11_2194 0.34 -2.6
424,026 + Ac3H11_2194 0.34 +0.3
424,027 - Ac3H11_2194 0.34 -1.1
424,027 - Ac3H11_2194 0.34 +0.0
424,027 - Ac3H11_2194 0.34 -1.4
424,266 + Ac3H11_2194 0.58 +0.8
424,267 - Ac3H11_2194 0.58 +0.0
425,000 + -2.7
425,044 + Ac3H11_2195 0.12 -1.3
425,044 + Ac3H11_2195 0.12 +0.2
425,044 + Ac3H11_2195 0.12 -0.3
425,044 + Ac3H11_2195 0.12 +0.4
425,044 + Ac3H11_2195 0.12 +0.6
425,045 - Ac3H11_2195 0.12 +1.7
425,045 - Ac3H11_2195 0.12 +0.2
425,045 - Ac3H11_2195 0.12 -0.7
425,045 - Ac3H11_2195 0.12 -1.2
425,045 - Ac3H11_2195 0.12 -1.8
425,045 - Ac3H11_2195 0.12 +0.7
425,045 - Ac3H11_2195 0.12 -0.3
425,045 - Ac3H11_2195 0.12 -0.8
425,045 - Ac3H11_2195 0.12 +0.8
425,045 - Ac3H11_2195 0.12 +0.8
425,158 + Ac3H11_2195 0.19 +1.6
425,158 + Ac3H11_2195 0.19 +1.3
425,158 + Ac3H11_2195 0.19 +1.1
425,159 - Ac3H11_2195 0.19 +1.6
425,389 + Ac3H11_2195 0.33 +0.6
425,389 + Ac3H11_2195 0.33 -0.0
425,389 + Ac3H11_2195 0.33 +0.2
425,389 + Ac3H11_2195 0.33 +1.2
425,389 + Ac3H11_2195 0.33 -2.1
425,389 + Ac3H11_2195 0.33 +0.8
425,389 + Ac3H11_2195 0.33 +1.8
425,390 - Ac3H11_2195 0.33 +1.0
425,390 - Ac3H11_2195 0.33 -0.4
425,390 - Ac3H11_2195 0.33 -0.2
425,390 - Ac3H11_2195 0.33 -0.1
425,390 - Ac3H11_2195 0.33 +1.1
425,398 + Ac3H11_2195 0.33 +0.0
425,399 - Ac3H11_2195 0.33 -0.3
425,443 + Ac3H11_2195 0.36 +1.2
425,443 + Ac3H11_2195 0.36 -0.9
425,444 - Ac3H11_2195 0.36 -3.1
425,444 - Ac3H11_2195 0.36 +1.8
425,467 + Ac3H11_2195 0.37 +2.1
425,467 + Ac3H11_2195 0.37 -1.6
425,467 + Ac3H11_2195 0.37 +2.6
425,467 + Ac3H11_2195 0.37 +2.1
425,467 + Ac3H11_2195 0.37 -2.3
425,467 + Ac3H11_2195 0.37 -1.8
425,468 - Ac3H11_2195 0.37 -2.1
425,468 - Ac3H11_2195 0.37 +1.1
425,468 - Ac3H11_2195 0.37 -2.6
425,468 - Ac3H11_2195 0.37 +0.6
425,530 + Ac3H11_2195 0.41 +1.3
425,530 + Ac3H11_2195 0.41 -0.1
425,531 - Ac3H11_2195 0.41 -0.2
425,531 - Ac3H11_2195 0.41 -2.6
425,531 - Ac3H11_2195 0.41 +0.4
425,893 + Ac3H11_2195 0.62 -0.8
425,893 + Ac3H11_2195 0.62 -1.3
425,893 + Ac3H11_2195 0.62 -1.7
425,893 + Ac3H11_2195 0.62 +1.6
425,893 + Ac3H11_2195 0.62 +1.3
425,894 - Ac3H11_2195 0.63 +0.5
425,894 - Ac3H11_2195 0.63 +0.4
425,894 - Ac3H11_2195 0.63 -0.5
425,894 - Ac3H11_2195 0.63 +0.2
425,894 - Ac3H11_2195 0.63 +0.4
425,894 - Ac3H11_2195 0.63 -0.5
425,894 - Ac3H11_2195 0.63 -1.3
425,894 - Ac3H11_2195 0.63 +0.0
425,987 - Ac3H11_2195 0.68 +0.9
425,987 - Ac3H11_2195 0.68 -0.4
425,987 - Ac3H11_2195 0.68 -2.2
426,109 + Ac3H11_2195 0.75 -1.4
426,109 + Ac3H11_2195 0.75 +0.6
426,109 + Ac3H11_2195 0.75 -0.3
426,109 + Ac3H11_2195 0.75 +0.0
426,109 + Ac3H11_2195 0.75 +1.6
426,109 + Ac3H11_2195 0.75 +0.3
426,109 + Ac3H11_2195 0.75 +0.1
426,109 + Ac3H11_2195 0.75 -1.6
426,110 - Ac3H11_2195 0.75 +0.0
426,110 - Ac3H11_2195 0.75 -0.6
426,110 - Ac3H11_2195 0.75 -0.7
426,110 - Ac3H11_2195 0.75 -2.9
426,110 - Ac3H11_2195 0.75 +0.0
426,110 - Ac3H11_2195 0.75 +0.2
426,110 - Ac3H11_2195 0.75 +0.8
426,110 - Ac3H11_2195 0.75 -0.6
426,110 - Ac3H11_2195 0.75 +2.2
426,110 - Ac3H11_2195 0.75 +0.4
426,110 - Ac3H11_2195 0.75 +0.6
426,118 + Ac3H11_2195 0.76 +0.1
426,118 + Ac3H11_2195 0.76 +0.2
426,119 - Ac3H11_2195 0.76 -1.6
426,220 + Ac3H11_2195 0.82 -1.4
426,220 + Ac3H11_2195 0.82 -1.5
426,220 + Ac3H11_2195 0.82 +2.9
426,220 + Ac3H11_2195 0.82 +0.5
426,221 - Ac3H11_2195 0.82 +0.1
426,223 + Ac3H11_2195 0.82 +1.6
426,223 + Ac3H11_2195 0.82 -0.2
426,223 + Ac3H11_2195 0.82 +0.6
426,223 + Ac3H11_2195 0.82 -0.8
426,224 - Ac3H11_2195 0.82 -2.2
426,224 - Ac3H11_2195 0.82 -1.0
426,224 - Ac3H11_2195 0.82 -0.4
426,472 + +1.4
426,472 + -0.3
426,472 + +0.8
426,472 + -1.3
426,472 + +0.1
426,472 + -1.7
426,472 + +0.5
426,473 - -0.0
426,473 - -1.4
426,473 - +0.3
426,473 - -2.4
426,526 + +0.4
426,526 + -2.2
426,527 - +0.7
426,527 - +1.5
426,527 - +1.1
426,527 - +0.4
426,542 + +0.1
426,542 + -0.3
426,543 - +1.3
426,647 + Ac3H11_2196 0.21 +0.1
426,689 + Ac3H11_2196 0.29 +0.5
426,689 + Ac3H11_2196 0.29 +0.7
426,689 + Ac3H11_2196 0.29 +0.5
426,689 + Ac3H11_2196 0.29 -1.0
426,689 + Ac3H11_2196 0.29 -1.4
426,689 + Ac3H11_2196 0.29 +0.1
426,689 + Ac3H11_2196 0.29 -1.0
426,689 + Ac3H11_2196 0.29 +0.3
426,689 + Ac3H11_2196 0.29 -0.1
426,689 + Ac3H11_2196 0.29 +1.7
426,689 + Ac3H11_2196 0.29 -0.5
426,689 + Ac3H11_2196 0.29 +1.6
426,689 + Ac3H11_2196 0.29 +0.0
426,690 - Ac3H11_2196 0.29 +0.0
426,690 - Ac3H11_2196 0.29 -0.0
426,690 - Ac3H11_2196 0.29 -0.4
426,690 - Ac3H11_2196 0.29 +1.0
426,690 - Ac3H11_2196 0.29 -1.8
426,690 - Ac3H11_2196 0.29 -2.3
426,690 - Ac3H11_2196 0.29 -0.8
426,690 - Ac3H11_2196 0.29 -0.4
426,690 - Ac3H11_2196 0.29 +0.6
426,690 - Ac3H11_2196 0.29 -0.6
426,690 - Ac3H11_2196 0.29 +1.2
426,690 - Ac3H11_2196 0.29 -1.0
426,690 - Ac3H11_2196 0.29 +0.1
426,690 - Ac3H11_2196 0.29 +0.8
426,690 - Ac3H11_2196 0.29 +0.2
426,690 - Ac3H11_2196 0.29 +0.5
426,690 - Ac3H11_2196 0.29 -2.2
426,690 - Ac3H11_2196 0.29 +0.4
426,690 - Ac3H11_2196 0.29 +0.6
426,690 - Ac3H11_2196 0.29 -0.3
427,051 - +0.4
427,100 + Ac3H11_2197 0.11 -0.3
427,101 - Ac3H11_2197 0.11 +0.8
427,101 - Ac3H11_2197 0.11 +1.6
427,101 - Ac3H11_2197 0.11 -2.4
427,166 + Ac3H11_2197 0.37 +1.2
427,166 + Ac3H11_2197 0.37 -0.7
427,166 + Ac3H11_2197 0.37 +0.2
427,166 + Ac3H11_2197 0.37 +1.4
427,167 - Ac3H11_2197 0.37 +1.8
427,167 - Ac3H11_2197 0.37 +1.1
427,190 + Ac3H11_2197 0.46 +2.3
427,190 + Ac3H11_2197 0.46 +0.2
427,190 + Ac3H11_2197 0.46 +0.2
427,190 + Ac3H11_2197 0.46 +0.2
427,190 + Ac3H11_2197 0.46 +0.5
427,190 + Ac3H11_2197 0.46 -0.8
427,190 + Ac3H11_2197 0.46 -0.5
427,190 + Ac3H11_2197 0.46 -1.9
427,190 + Ac3H11_2197 0.46 +1.3
427,190 + Ac3H11_2197 0.46 +1.9
427,191 - Ac3H11_2197 0.47 +0.5
427,191 - Ac3H11_2197 0.47 -1.8
427,191 - Ac3H11_2197 0.47 -1.2
427,191 - Ac3H11_2197 0.47 -1.1
427,191 - Ac3H11_2197 0.47 +0.7
427,191 - Ac3H11_2197 0.47 -0.5
427,191 - Ac3H11_2197 0.47 -0.6
427,191 - Ac3H11_2197 0.47 +1.8
427,191 - Ac3H11_2197 0.47 -0.3
427,191 - Ac3H11_2197 0.47 -0.5
427,191 - Ac3H11_2197 0.47 -1.0
427,413 + -0.9
427,413 + +0.8
427,414 - -1.9
427,414 - +0.3

Or see this region's nucleotide sequence